Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fomitopsis_20pinicola_20[genbank_20GCA_5F001931775.1_202017-01-04] 2,178 sequences; 45,982,938 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq117 102 6e-17 seq1836 95.1 1e-14 >seq117 Length=384797 Score = 102 bits (112), Expect = 6e-17 Identities = 113/148 (76%), Gaps = 2/148 (1%) Strand=Plus/Plus Query 33897 GAAACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATC 33956 || ||| || | || |||||||| || || ||||||||||||||||| ||||| ||||| Sbjct 361455 GAGACCGCCACGGAGACGCAGCACGAGGTGGAGCGTGCTCTCCTTCTGGATGTTATAATC 361514 Query 33957 TGCCAATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCA 34015 | || || || |||| ||||| |||||||| || || |||||||||||||| || Sbjct 361515 CG-AAAGAGTACGGCCGTCCTCCAACTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAG 361573 Query 34016 CCGGCACGCTCTCTTTGTCCATAATTTT 34043 ||| | || ||| |||||| ||| || Sbjct 361574 GCGGAATGCCCTCCTTGTCCTGAATCTT 361601 >seq1836 Length=575610 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/213 (71%), Gaps = 3/213 (1%) Strand=Plus/Plus Query 33917 GCACC-AGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGCTCGTCG 33975 ||||| |||||||| || ||||||||| |||||||| || | || || |||| Sbjct 191683 GCACCGAGATGAAGGGTTGACTCCTTCTGGATGTTGTAGTCAGACAGCGTGCGGCCGTCT 191742 Query 33976 TCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCTTTGTCC 34035 ||||| |||||||| ||||| ||||||||||||||||| || | || ||| |||||| Sbjct 191743 TCCAACTGCTTGCCCGCAAAAATCAGGCGCTGCTGATCGGGAGGGATGCCCTCCTTGTCC 191802 Query 34036 ATAATTTTTTGCTTAATGGAACTCACAC-TATCAGTAGATTCGCATTCGACCGTTATTGT 34094 || || ||| | | ||| | | || | || ||| ||||| ||| || || Sbjct 191803 TGGATCTTCGCCTTCA-CGTTGTCAATCGTGTCGGACGACTCGACTTCGAGCGTGATCGT 191861 Query 34095 TTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || || || || || || || ||||||||||| Sbjct 191862 CTTGCCCGTGAGAGTCTTGACGAAGATTTGCAT 191894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397051860226756