Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fomitopsis_20pinicola_20[genbank_20GCA_5F001931775.1_202017-01-04] 2,178 sequences; 45,982,938 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq1 109 1e-18 seq1555 95.1 3e-14 >seq1 Length=925270 Score = 109 bits (120), Expect = 1e-18 Identities = 129/175 (74%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 243551 TTCCATGCCGGCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAG 243610 |||| ||| | || || ||||||||| | |||||| | ||||||||||||||||| | Sbjct 580893 TTCCTTGCGGCCTCATCGGCATGAACGCGACGCTCATGTGCCAGTACATCGAATTCGTCG 580952 Query 243611 CCGACCGCATTTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTG 243670 | ||||| | | ||||||| || ||| ||||||||| | ||||||||| | Sbjct 580953 CTGACCGGCTCCTTGTCGCGCTCGGCGGCTCGAAGGTGTACAACGTGACGAACCCCTTCG 581012 Query 243671 CCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGT 243725 ||| ||||| | || ||||| || || || || ||||||||||| ||||| || Sbjct 581013 ACTTCATGGACATGATCTCGCTCCAGGGCAAGACCAACTTCTTCGAGAAGCGCGT 581067 Score = 100 bits (110), Expect = 6e-16 Identities = 126/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 243553 CCATGCCGGCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCC 243612 || ||| ||| |||||||||||| | | |||||| | ||||||||||||||||| ||| Sbjct 578170 CCGTGCGCGCTGATTGGCATGAACGCGCAGCTCATGCGCCAGTACATCGAATTCGTCGCC 578111 Query 243613 GACCGCATTTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCC 243672 ||| | | | | |||| || | |||||| ||| || | | ||| || || | Sbjct 578110 GACAGGCTGCTGGTTTCGCTGGGCAACGAGAAACACTACCACGCAACGAATCCGTTCGAT 578051 Query 243673 TTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGT 243725 || ||||| | || ||||| || || || || ||||||||||| |||||||| Sbjct 578050 TTCATGGACATGATCTCGCTCCAGGGCAAGACCAACTTCTTCGAGAAGCGTGT 577998 >seq1555 Length=357173 Score = 95.1 bits (104), Expect = 3e-14 Identities = 176/253 (70%), Gaps = 4/253 (2%) Strand=Plus/Plus Query 298199 TCGGTCATGATCATCACATGACCGTAACGAAGCGAGGACGTGTCTTTGTACACTTTACCG 298258 |||||||| | ||| | | || |||||||| | |||||| ||||| | || | Sbjct 287763 TCGGTCATCAACATGAGTCGTCCATAACGAAGACCAGCCGTGTCCTTGTAGTCCTTGTTG 287822 Query 298259 GTTTGAAGGCCGAGAATTTGTTTGA-GCGCTGTGATTTCTTCGTTCTTCGTGATGCTTGC 298317 || ||||||||||| | |||| | ||| ||| || ||||||||| |||| || Sbjct 287823 TGCTGCAGGCCGAGAATCTTCTTGATGTTCTG-GATCTCCTCGTTCTTCATGAT-CTGAT 287880 Query 298318 CACGGAT-GCATCGCGGACATTCAATAGTTTTCCACGAAGAGGGAACACTCCATATCTCT 298376 || | | ||||||||||| || | || ||||| || ||||||||||| ||| | | | Sbjct 287881 CATGCTTAGCATCGCGGACGTTGAGCAGCTTTCCGCGCAGAGGGAACACGCCAAAGTTAT 287940 Query 298377 CGCGACCGACCACGGACAGCCCTGCGATTGCAAGTGTCGCTGCGGAATCCCCCTCCGTCA 298436 |||| ||||| || ||| || |||| || |||| | ||||| || || || || | Sbjct 287941 CGCGGCCGACGACACTCAGACCAGCGACAGCTAGTGACTTGGCGGAGTCTCCTTCTGTGA 288000 Query 298437 GAATGAGAGTGCA 298449 | || | ||||| Sbjct 288001 GGATCAACGTGCA 288013 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102849223444300