Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fomitopsis_20pinicola_20[genbank_20GCA_5F001931775.1_202017-01-04] 2,178 sequences; 45,982,938 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq1836 96.9 3e-15 seq117 96.9 3e-15 >seq1836 Length=575610 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 |||||| || | | |||||| || |||| || || || || || ||||||||||| | Sbjct 191895 ACCGCCACGGAGGCGAAGCACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCGGA 191954 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | |||||| | || || ||||||||||| || | || | ||||||||||||||||| Sbjct 191955 CAGGGTGCGGCCATCCTCGAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGG 192014 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 || || || || || || || || ||| || || | || || | || || Sbjct 192015 GATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTGTCAATCGTGTCGGACGACTCGAC 192074 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| | || | |||||||| || | ||| || ||||| || ||||| Sbjct 192075 TTCGAGCGTGATCGTCTTGCCCGTGAGAGTCTTAACGAAGATCTGCAT 192122 Score = 87.8 bits (96), Expect = 2e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 64238 AGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGC 64297 ||||||| || || || ||||| ||||||||||| | | || | |||| || | | Sbjct 190950 AGATGAAGGGTGGACTCCTTTTGGATGTTGTAATCCGAAAGCGTCCTGCCGTCCTCCAAC 191009 Query 64298 TGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATT 64357 ||||| || || | ||||| ||||||||||| || ||||| || || || || || ||| Sbjct 191010 TGCTTCCCAGCGAAGATGAGACGCTGCTGGTCTGGGGGAATACCCTCCTTGTCCTGGATT 191069 Query 64358 TTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCG 64417 || ||| || || | || || | || || || | ||| | ||||| ||| Sbjct 191070 TTCGCCTTGACGTTGTCAATCGTGTCGGACGACTCGACCTCAAGAGTGATCGTCTTCCCG 191129 Query 64418 GTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| || || || ||||| ||||| Sbjct 191130 GTCAACGTCTTCACAAAAATCTGCAT 191155 >seq117 Length=384797 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 64253 TCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAA 64312 || || ||||||||||| || | | ||| ||| ||||||| |||||||| || || | Sbjct 361773 TCCTTCTGAATGTTGTAGTCAGACAGGGTCCGCCCGTCTTCGAGCTGCTTCCCAGCGAAG 361832 Query 64313 ATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACC 64372 ||||| ||||||||||| ||||| ||||| || || || || || || ||| || Sbjct 361833 ATGAGGCGCTGCTGGTCTGGAGGGATTCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTG 361892 Query 64373 TCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACG 64432 || | || || | ||||| || | || | ||||| |||||||| || || ||| Sbjct 361893 TCGATGGTGTCCGAAGACTCCACCTCGAGGGTGATAGTCTTCCCGGTCAACGTCTTGACG 361952 Query 64433 AAAATTTGCAT 64443 || || ||||| Sbjct 361953 AAGATCTGCAT 361963 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 64253 TCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAA 64312 || || || |||||||| || | || ||||| | || || ||||||||||| ||| | Sbjct 362055 TCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGACCATCCTCGAGCTGCTTGCCAGCAAAG 362114 Query 64313 ATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACC 64372 || || || |||||||| || ||||| || || || ||||| || ||| ||| ||| Sbjct 362115 ATCAGACGTTGCTGGTCAGGTGGAATACCCTCCTTGTCTTGAATCTTTGCCTTGACATTG 362174 Query 64373 TCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACG 64432 || | || ||| | || || || | || | |||||||| || | ||| || ||| Sbjct 362175 TCGATGGTGTCAGAAGACTCAACCTCAAGGGTAATAGTCTTGCCCGTAAGAGTCTTCACG 362234 Query 64433 AAAATTTGCAT 64443 || || ||||| Sbjct 362235 AAGATCTGCAT 362245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499631197170320