Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fomitopsis_20pinicola_20[genbank_20GCA_5F001931775.1_202017-01-04] 2,178 sequences; 45,982,938 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq1 116 4e-21 seq117 96.9 3e-15 seq1836 91.5 1e-13 >seq1 Length=925270 Score = 116 bits (128), Expect = 4e-21 Identities = 133/176 (76%), Gaps = 2/176 (1%) Strand=Plus/Minus Query 52654 TGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGG 52713 ||||| || |||| | ||||||||||||||| |||| || |||||||||| || || | Sbjct 578172 TGCCGTGCGCGCTGATTGGCATGAACGCGCAGCTCATGCGCCAGTACATCGAATTCGTCG 578113 Query 52714 CGGATCGTCTGTTGGTGCAGCTCGGGCAGCCA-AAGTACTTCAACGCTCGCAATCCGTTT 52772 | || | ||| |||| ||| ||||| | | || ||| | |||| |||||||| Sbjct 578112 CCGACAGGCTGCTGGTTTCGCT-GGGCAACGAGAAACACTACCACGCAACGAATCCGTTC 578054 Query 52773 GAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGT 52828 || || ||| ||| || ||||| |||||||||||||||| ||||||||||| || Sbjct 578053 GATTTCATGGACATGATCTCGCTCCAGGGCAAGACCAACTTCTTCGAGAAGCGTGT 577998 Score = 109 bits (120), Expect = 5e-19 Identities = 124/162 (77%), Gaps = 6/162 (4%) Strand=Plus/Minus Query 52392 GCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCC 52451 || ||||| |||||||||||||| || |||||| | ||||| |||||| || ||| Sbjct 578483 GCTGAGCGACTGGTGGCCTTCGCCGCCGTGGAGGGCATCTTTTTCTCCGGCTCGTTCGCC 578424 Query 52452 GCCATCTTTTACATTAA--AACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGT 52509 ||||| || | | || |||| ||| | |||||||| ||||| ||| ||||||| Sbjct 578423 GCCATATTCTGGCTCAAGAAACGC--GGCCTCATGCCCGGACTGACATTCTCAAACGAGT 578366 Query 52510 TGAT-ATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGC 52550 |||| ||| |||||||| ||| ||||||||||||| || ||| Sbjct 578365 TGATTATC-CGCGACGAGGGAATGCACACGGACTTCGCATGC 578325 Score = 86.0 bits (94), Expect = 6e-12 Identities = 116/159 (73%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 52671 GGCATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTG 52730 |||||||||||| | ||||||| |||||||||| || || || || || || | || Sbjct 580910 GGCATGAACGCGACGCTCATGTGCCAGTACATCGAATTCGTCGCTGACCGGCTCCTTGTC 580969 Query 52731 CAGCTCGGGCAGC-CAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACAT 52789 |||||| | || | ||| | ||||| || || || || || ||| ||| || Sbjct 580970 GCGCTCGG-CGGCTCGAAGGTGTACAACGTGACGAACCCCTTCGACTTCATGGACATGAT 581028 Query 52790 TTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGT 52828 ||||| |||||||||||||||| ||||||||||| || Sbjct 581029 CTCGCTCCAGGGCAAGACCAACTTCTTCGAGAAGCGCGT 581067 >seq117 Length=384797 Score = 96.9 bits (106), Expect = 3e-15 Identities = 137/193 (71%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 |||||| || |||||||||||| | || || ||||| || || ||||| | | Sbjct 362332 CTCCTTCTGGATGTTGTAGTCGGAGAGTGTCCGACCATCCTCAAGCTGCTTACCAGCGAA 362391 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTG 138542 ||| || ||||| || ||||| || ||||| || || || ||| || |||| | Sbjct 362392 GATGAGGCGCTGCTGATCCGGGGGAATACCCTCCTTATCCTGGATCTTGGCCTTTACGTT 362451 Query 138543 TTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAC 138602 || | |||||| | ||||||||||||| ||| | || || ||||| || || || || Sbjct 362452 GTCGATGGTGTCCGAAGACTCCACCTCGAGCGTAATGGTCTTCCCAGTGAGGGTCTTGAC 362511 Query 138603 AAAAATCTGCATG 138615 ||| ||||||||| Sbjct 362512 AAAGATCTGCATG 362524 Score = 89.7 bits (98), Expect = 5e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 |||||| |||||||||||||| || || ||| ||| ||||| || || || | | Sbjct 361772 CTCCTTCTGAATGTTGTAGTCAGACAGGGTCCGCCCGTCTTCGAGCTGCTTCCCAGCGAA 361831 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTG 138542 ||| || ||||| ||||| ||||| || || || ||||| ||| || || | | Sbjct 361832 GATGAGGCGCTGCTGGTCTGGAGGGATTCCCTCCTTGTCCTGGATCTTCGCCTTGACGTT 361891 Query 138543 TTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAC 138602 || | |||||| | ||||||||||||| || | || || || |||| || || || Sbjct 361892 GTCGATGGTGTCCGAAGACTCCACCTCGAGGGTGATAGTCTTCCCGGTCAACGTCTTGAC 361951 Query 138603 AAAAATCTGCAT 138614 || |||||||| Sbjct 361952 GAAGATCTGCAT 361963 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 |||||| || |||||||||||| | || || |||||||| || || || | | | Sbjct 362054 CTCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGACCATCCTCGAGCTGCTTGCCAGCAAA 362113 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG--TTTTAAT 138540 ||| ||||| || ||||| || || ||||| || ||||| ||| | |||| || || Sbjct 362114 GATCAGACGTTGCTGGTCAGGTGGAATACCCTCCTTGTC-TTGAATCTTTGCCTTGACAT 362172 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 || || | |||||| | ||||| ||||| | || | || || || || ||||| || Sbjct 362173 TG-TCGATGGTGTCAGAAGACTCAACCTCAAGGGTAATAGTCTTGCCCGTAAGAGTCTTC 362231 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 362232 ACGAAGATCTGCAT 362245 >seq1836 Length=575610 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||||||||| |||||||| || | || | |||||| | || || || | Sbjct 190962 GACTCCTTTTGGATGTTGTAATCCGAAAGCGTCCTGCCGTCCTCCAACTGCTTCCCAGCG 191021 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||| ||||| || || ||||| || ||||| |||||| || | Sbjct 191022 AAGATGAGACGCTGCTGGTCTGGGGGAATACCCTCCTTGTCCTGGATTTTCGCCTTGACG 191081 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||||||| |||||| ||||| | || | ||| || || |||| || || Sbjct 191082 TTGTCAATCGTGTCGGACGACTCGACCTCAAGAGTGATCGTCTTCCCGGTCAACGTCTTC 191141 Query 138601 ACAAAAATCTGCATGGCT 138618 ||||||||||||||| || Sbjct 191142 ACAAAAATCTGCATGCCT 191159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496248889256160