Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fomitopsis_20pinicola_20[genbank_20GCA_5F001931775.1_202017-01-04] 2,178 sequences; 45,982,938 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq1836 134 1e-26 seq117 111 1e-19 seq1 105 6e-18 >seq1836 Length=575610 Score = 134 bits (148), Expect = 1e-26 Identities = 150/198 (76%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||||||| || ||||| ||| || ||||| || || Sbjct 191926 GTGGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGGCCATCCTCGAGCTGCTTGCCC 191985 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| ||||||| |||||||| |||||||| ||||||||||||||| ||| ||| ||| Sbjct 191986 GCGAAGATCAAGCGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTC 192045 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | |||| || | ||||| | ||||||||||| || | ||| ||||| || ||||| Sbjct 192046 ACGTTG-TCAATCGTGTCGGACGACTCGACTTCGAGCGTGATCGTCTTGCCCGTGAGAGT 192104 Query 127096 TTTTACAAAAATCTGCAT 127113 || || || |||||||| Sbjct 192105 CTTAACGAAGATCTGCAT 192122 Score = 107 bits (118), Expect = 2e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| || || |||||| || || | ||| || || Sbjct 191698 GTTGACTCCTTCTGGATGTTGTAGTCAGACAGCGTGCGGCCGTCTTCCAACTGCTTGCCC 191757 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || | |||| ||||||||||||||||| ||||||||||||||| ||| ||| ||| Sbjct 191758 GCAAAAATCAGGCGCTGCTGATCGGGAGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTC 191817 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | |||| || | ||||| | ||||||||||| || | ||| ||||| || ||||| Sbjct 191818 ACGTTG-TCAATCGTGTCGGACGACTCGACTTCGAGCGTGATCGTCTTGCCCGTGAGAGT 191876 Query 127096 TTTTACAAAAATCTGCAT 127113 || || || || ||||| Sbjct 191877 CTTGACGAAGATTTGCAT 191894 Score = 105 bits (116), Expect = 6e-18 Identities = 146/202 (72%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| ||||| || |||||||| | ||| | || || | ||| || ||| Sbjct 190959 GTGGACTCCTTTTGGATGTTGTAATCCGAAAGCGTCCTGCCGTCCTCCAACTGCTTCCCA 191018 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||| | |||||||| || || || || |||||||||||| ||||||| |||| Sbjct 191019 GCGAAGATGAGACGCTGCTGGTCTGGGGGAATACCCTCCTTGTCCTGGATTTTCGCCTTG 191078 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | |||| || | ||||| | |||||| || | || | ||| || ||||||| || Sbjct 191079 ACGTTG-TCAATCGTGTCGGACGACTCGACCTCAAGAGTGATCGTCTTCCCGGTCAACGT 191137 Query 127096 TTTTACAAAAATCTGCATGGCT 127117 || ||||||||||||||| || Sbjct 191138 CTTCACAAAAATCTGCATGCCT 191159 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| || || | || | || | || ||||| || ||||||||||| ||| | Sbjct 191385 CCACCGCGCAACCGGAGGACAAGGTGGAGGGTCGACTCCTTCTGAATATTGTAGTCGGAC 191444 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||| || || || | |||||| || ||| |||| | ||||||||||||||||| Sbjct 191445 AGCGTCCGGCCGTCTTCCAACTGTTTCCCGGCGAAGATGAGGCGCTGCTGATCGGGAGGG 191504 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||| ||| ||| || ||||| |||| |||| ||| || | ||| || Sbjct 191505 ATGCCCTCCTTATCCTGGATCTTTGCCTTGACGTTG-TCGATGGTATCGGAGGACTCAAC 191563 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | || | || || || || || || || || || || |||||| Sbjct 191564 CTCCAGCGTTATGGTCTTTCCCGTGAGCGTCTTGACGAATATTTGCATG 191612 >seq117 Length=384797 Score = 111 bits (122), Expect = 1e-19 Identities = 142/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 126922 CTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTA 126981 ||| || ||||| ||||| || || || || || || ||||| || |||||| | Sbjct 361772 CTCCTTCTGAATGTTGTAGTCAGACAGGGTCCGCCCGTCTTCGAGCTGCTTCCCAGCGAA 361831 Query 126982 GATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTT 127040 ||| | |||||||| || ||||| || |||||||||||| ||| ||| ||||| ||| Sbjct 361832 GATGAGGCGCTGCTGGTCTGGAGGGATTCCCTCCTTGTCCTGGATCTTCGCCTTGACGTT 361891 Query 127041 GTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTA 127100 | |||| |||||||| | ||| || |||| ||| | || || ||||||| || || | Sbjct 361892 G-TCGATGGTGTCCGAAGACTCCACCTCGAGGGTGATAGTCTTCCCGGTCAACGTCTTGA 361950 Query 127101 CAAAAATCTGCAT 127113 | || |||||||| Sbjct 361951 CGAAGATCTGCAT 361963 Score = 100 bits (110), Expect = 3e-16 Identities = 140/194 (72%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 126922 CTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTA 126981 ||| || || || ||||| ||| | || ||| ||| || ||||| || |||||| | Sbjct 362332 CTCCTTCTGGATGTTGTAGTCGGAGAGTGTCCGACCATCCTCAAGCTGCTTACCAGCGAA 362391 Query 126982 GATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTT 127040 ||| | ||||||||||| || || || |||||||| ||| ||| || ||| | ||| Sbjct 362392 GATGAGGCGCTGCTGATCCGGGGGAATACCCTCCTTATCCTGGATCTTGGCCTTTACGTT 362451 Query 127041 GTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTA 127100 | |||| |||||||| | ||| || |||| || | || || || || || || || | Sbjct 362452 G-TCGATGGTGTCCGAAGACTCCACCTCGAGCGTAATGGTCTTCCCAGTGAGGGTCTTGA 362510 Query 127101 CAAAAATCTGCATG 127114 |||| ||||||||| Sbjct 362511 CAAAGATCTGCATG 362524 Score = 98.7 bits (108), Expect = 9e-16 Identities = 117/156 (75%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || | ||| || |||||| |||||| |||||||| || || || |||||||||||| Sbjct 361531 TCCTCCAACTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGCGGAATGCCCTCCTTG 361590 Query 127019 TCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 ||| || ||| ||||| |||| |||| |||||||| ||| || |||| || | Sbjct 361591 TCCTGAATCTTCGCCTTGACGTTG-TCGATGGTGTCCGACGACTCAACCTCGAGAGTGAT 361649 Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| || ||||||| || || || || |||||||| Sbjct 361650 CGTCTTCCCGGTCAACGTCTTGACGAAGATCTGCAT 361685 Score = 98.7 bits (108), Expect = 9e-16 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 126922 CTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTA 126981 ||| || || || ||||| ||| | ||||||| ||| || ||||| || ||||| | Sbjct 362054 CTCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGACCATCCTCGAGCTGCTTGCCAGCAAA 362113 Query 126982 GATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTG-CTTGAGTT 127040 ||||| || ||||| || || || || |||||||||| | ||| | | || ||||| | Sbjct 362114 GATCAGACGTTGCTGGTCAGGTGGAATACCCTCCTTGT-CTTGAATCTTTGCCTTGACAT 362172 Query 127041 GTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTA 127100 |||| |||||| | | ||| || || | ||| | || ||||| || ||||| || | Sbjct 362173 TGTCGATGGTGTCAGAAGACTCAACCTCAAGGGTAATAGTCTTGCCCGTAAGAGTCTTCA 362232 Query 127101 CAAAAATCTGCAT 127113 | || |||||||| Sbjct 362233 CGAAGATCTGCAT 362245 >seq1 Length=925270 Score = 105 bits (116), Expect = 6e-18 Identities = 118/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 47412 GGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTT 47471 || ||||||||| || | ||| | ||||||||||||| ||||||||| | ||||| ||| Sbjct 578155 GGCATGAACGCGCAGCTCATGCGCCAGTACATCGAATTCGTCGCCGACAGGCTGCTGGTT 578096 Query 47472 CAGCTAAAGTATCCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATT 47531 ||| | || |||||| | |||||| ||||| || ||| ||| || Sbjct 578095 TCGCTGGGCAACGAGAAACACTACCACGCAACGAATCCGTTCGATTTCATGGACATGATC 578036 Query 47532 TCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGT 47569 |||||| |||||||||||||||| ||||||||||| || Sbjct 578035 TCGCTCCAGGGCAAGACCAACTTCTTCGAGAAGCGTGT 577998 Score = 87.8 bits (96), Expect = 2e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 47133 GCCGAACGTTTGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTTGCG 47192 ||||| ||| | |||||||||| ||||||||| |||||||||| ||| ||||||| Sbjct 580581 GCCGAGCGTCTCGTCGCTTTCGCTGCCGTCGAGGGTATCTTCTTCTCTGGCTCCTTTGCG 580640 Query 47193 GCGATATTTTACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTA 47252 |||| || | | || | || | ||||| ||||||||||| |||||||| Sbjct 580641 TCGATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGCCTCACGTTCTCTAACGAGCTG 580700 Query 47253 ATCTCGAGAGACGAAGGCCTGCACACCAACTTTGCCTG 47290 ||| | ||||| ||| |||||||| |||| || || Sbjct 580701 ATCAGCCGTGACGAGGGCATGCACACCGACTTCGCTTG 580738 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475487854490720