Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fomitopsis_20pinicola_20[genbank_20GCA_5F001931775.1_202017-01-04] 2,178 sequences; 45,982,938 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq1836 100 3e-16 seq117 98.7 9e-16 >seq1836 Length=575610 Score = 100 bits (110), Expect = 3e-16 Identities = 163/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | | ||| || || || || || ||||| ||||| || |||||| Sbjct 191893 ATACCGCCACGGAGGCGAAGCACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCG 191952 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| ||| || | || || || ||| | ||||| || |||||||| || Sbjct 191953 GACAGGGTGCGGCCATCCTCGAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGA 192012 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || ||||| || || || || || || || | || | || | |||||||| ||||| Sbjct 192013 GGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCA-CGTTGTCAATCGTGTCGGACGACTC 192071 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||||||||| || | ||| ||||| || ||||| || || || || |||||| Sbjct 192072 GACTTCGAGCGTGATCGTCTTGCCCGTGAGAGTCTTAACGAAGATCTGCATC 192123 Score = 96.9 bits (106), Expect = 3e-15 Identities = 147/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 45135 AGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAAT 45194 ||||| || || || ||||||||||| || ||||| | || | || ||||| Sbjct 190950 AGATGAAGGGTGGACTCCTTTTGGATGTTGTAATCCGAAAGCGTCCTGCCGTCCTCCAAC 191009 Query 45195 TGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATT 45254 || || || ||| | || | || |||||||| || ||||| || || || || || ||| Sbjct 191010 TGCTTCCCAGCGAAGATGAGACGCTGCTGGTCTGGGGGAATACCCTCCTTGTCCTGGATT 191069 Query 45255 TTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCC 45313 || |||| || | || | |||||||| |||||||| || ||||| | ||| || || Sbjct 191070 TTCGCCTTGA-CGTTGTCAATCGTGTCGGACGACTCGACCTCAAGAGTGATCGTCTTCCC 191128 Query 45314 GGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| | || || |||||||| ||||| Sbjct 191129 GGTCAACGTCTTCACAAAAATCTGCAT 191155 Score = 86.0 bits (94), Expect = 6e-12 Identities = 152/217 (70%), Gaps = 6/217 (3%) Strand=Plus/Plus Query 45135 AGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA--TCGTCCA 45192 ||||| || ||||| ||||| ||||| || || || ||| | | | || |||| Sbjct 191689 AGATGAAGGGTTGACTCCTTCTGGATGTTGTAGTCA--GACAGCGTGCGGCCGTCTTCCA 191746 Query 45193 ATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAA 45252 | || || || || | |||| || ||||| || || || ||||| || || || || | Sbjct 191747 ACTGCTTGCCCGCAAAAATCAGGCGCTGCTGATCGGGAGGGATGCCCTCCTTGTCCTGGA 191806 Query 45253 TTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 | || || | || | || | |||||||| |||||||||||||| || | ||| ||| Sbjct 191807 TCTTCGCCTTCA-CGTTGTCAATCGTGTCGGACGACTCGACTTCGAGCGTGATCGTCTTG 191865 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCATCGCGCGAC 45348 || || ||||| || || || |||||||| ||| || Sbjct 191866 CCCGTGAGAGTCTTGACGAAGATTTGCATACCGCCAC 191902 >seq117 Length=384797 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || ||||| | || ||| || || ||||| ||||| ||||| |||||||| Sbjct 361459 CCGCCACGGAGACGCAGCACGAGGTGGAGCGTGCTCTCCTTCTGGATGTTATAATCCGAA 361518 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || || ||||| || || || ||| | |||| || |||||||| |||||| Sbjct 361519 AGAGTACGGCCGTCCTCCAACTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGCGGA 361578 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 ||||| || || || ||||| || |||| || | || | |||||| || ||||| || Sbjct 361579 ATGCCCTCCTTGTCCTGAATCTTCGCCTTGA-CGTTGTCGATGGTGTCCGACGACTCAAC 361637 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||||| | ||| || ||||| | || || || || || ||||| Sbjct 361638 CTCGAGAGTGATCGTCTTCCCGGTCAACGTCTTGACGAAGATCTGCAT 361685 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 45150 TCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTAT 45209 ||||| ||||| || || ||| || || | ||| || | || || || || | Sbjct 362055 TCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGACCATCCTCGAGCTGCTTGCCAGCAAAG 362114 Query 45210 ATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT 45269 |||| ||||||||||| || ||||| || || || |||||||| ||| |||| Sbjct 362115 ATCAGACGTTGCTGGTCAGGTGGAATACCCTCCTTGTCTTGAATCTTTGCCTTGACATTG 362174 Query 45270 TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACA 45329 || | |||||| |||||||| || || || |||| || ||||| || ||||| || || Sbjct 362175 TCGATGGTGTCAGAAGACTCAACCTCAAGGGTAATAGTCTTGCCCGTAAGAGTCTTCACG 362234 Query 45330 AAAATTTGCAT 45340 || || ||||| Sbjct 362235 AAGATCTGCAT 362245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451990894212880