Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fomitopsis_20pinicola_20[genbank_20GCA_5F001931775.1_202017-01-04] 2,178 sequences; 45,982,938 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq1836 161 1e-34 seq117 134 2e-26 seq1666 91.5 2e-13 seq679 87.8 2e-12 >seq1836 Length=575610 Score = 161 bits (178), Expect = 1e-34 Identities = 153/193 (79%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||| ||||| || ||||| | || |||||||||||||| ||||| Sbjct 191931 CTCCTTCTGGATGTTGTAATCGGACAGGGTGCGGCCATCCTCGAGCTGCTTGCCCGCGAA 191990 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||||||||||||||||| || | || |||||||||| ||||||| ||| | ||| Sbjct 191991 GATCAAGCGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCA-CGT 192049 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | ||||||| ||| || || || | |||||| || |||||||| || || |||| Sbjct 192050 TGTCAATCGTGTCGGACGACTCGACTTCGAGCGTGATCGTCTTGCCCGTGAGAGTCTTAA 192109 Query 46581 CAAAGATTTGCAT 46593 | ||||| ||||| Sbjct 192110 CGAAGATCTGCAT 192122 Score = 143 bits (158), Expect = 3e-29 Identities = 149/193 (77%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| || || ||||| |||| || | ||||||||| || || Sbjct 191703 CTCCTTCTGGATGTTGTAGTCAGACAGCGTGCGGCCGTCTTCCAACTGCTTGCCCGCAAA 191762 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| ||||||||| |||| || | || |||||||||| ||||||| ||| | ||| Sbjct 191763 AATCAGGCGCTGCTGATCGGGAGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCA-CGT 191821 Query 46522 CGCCAC-CGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | || ||||||| ||| || || || | |||||| || |||||||| || || || | Sbjct 191822 TGTCAATCGTGTCGGACGACTCGACTTCGAGCGTGATCGTCTTGCCCGTGAGAGTCTTGA 191881 Query 46581 CAAAGATTTGCAT 46593 | ||||||||||| Sbjct 191882 CGAAGATTTGCAT 191894 Score = 120 bits (132), Expect = 3e-22 Identities = 144/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| || |||||||||||||| || || || |||| || | ||| || |||||||| Sbjct 191420 CTCCTTCTGAATATTGTAGTCGGACAGCGTCCGGCCGTCTTCCAACTGTTTCCCGGCGAA 191479 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||| |||| || | || |||||| ||| |||||| ||||| ||| Sbjct 191480 GATGAGGCGCTGCTGATCGGGAGGGATGCCCTCCTTATCCTGGATCTTTGCCTTGA-CGT 191538 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | || ||| || || || |||| ||| ||||| || ||||| ||||| || | Sbjct 191539 TGTCGATGGTATCGGAGGACTCAACCTCCAGCGTTATGGTCTTTCCCGTGAGCGTCTTGA 191598 Query 46581 CAAAGATTTGCAT 46593 | || |||||||| Sbjct 191599 CGAATATTTGCAT 191611 Score = 107 bits (118), Expect = 2e-18 Identities = 141/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||||||||| ||||| || || || || | |||| || | |||||| || ||||| Sbjct 190964 CTCCTTTTGGATGTTGTAATCCGAAAGCGTCCTGCCGTCCTCCAACTGCTTCCCAGCGAA 191023 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||||| | || | | |||||||||| ||| ||| ||||| ||| Sbjct 191024 GATGAGACGCTGCTGGTCTGGGGGAATACCCTCCTTGTCCTGGATTTTCGCCTTGA-CGT 191082 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | ||||||| ||| || || || | ||||| || || || |||| ||| || | Sbjct 191083 TGTCAATCGTGTCGGACGACTCGACCTCAAGAGTGATCGTCTTCCCGGTCAACGTCTTCA 191142 Query 46581 CAAAGATTTGCAT 46593 |||| || ||||| Sbjct 191143 CAAAAATCTGCAT 191155 Score = 82.4 bits (90), Expect = 9e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| || || ||||| | || ||||||||||| || ||||| Sbjct 192159 CTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCATCCTCGAGCTGCTTTCCAGCGAA 192218 Query 46462 TATCAAGCGCTGCTGGTCGG 46481 || | |||||||||||||| Sbjct 192219 GATGAGGCGCTGCTGGTCGG 192238 >seq117 Length=384797 Score = 134 bits (148), Expect = 2e-26 Identities = 162/218 (74%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||| ||| || || | || |||||||| ||||| || || || || ||||| || | Sbjct 361470 ACGCAGCACGAGGTGGAGCGTGCTCTCCTTCTGGATGTTATAATCCGAAAGAGTACGGCC 361529 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 ||| || | ||||||||| ||||| |||| |||||||||||| | ||| | || |||||| Sbjct 361530 GTCCTCCAACTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGCGGAATGCCCTCCTT 361589 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGA 46556 |||| |||||| ||||| ||| | | | ||||| ||| || || || | |||| Sbjct 361590 GTCCTGAATCTTCGCCTTGA-CGTTGTCGATGGTGTCCGACGACTCAACCTCGAGAGTGA 361648 Query 46557 TGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 | || || || |||| ||| || || ||||| |||||| Sbjct 361649 TCGTCTTCCCGGTCAACGTCTTGACGAAGATCTGCATT 361686 Score = 132 bits (146), Expect = 5e-26 Identities = 155/207 (75%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 46388 AGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGC 46447 || |||| ||| |||||||| || || |||||||| || || || ||| |||| |||||| Sbjct 361758 AGGTGCAGTGTGCTCTCCTTCTGAATGTTGTAGTCAGACAGGGTCCGCCCGTCTTCGAGC 361817 Query 46448 TGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATC 46507 ||||| || ||||| || | |||||||||||| | || | | |||||||||| |||| Sbjct 361818 TGCTTCCCAGCGAAGATGAGGCGCTGCTGGTCTGGAGGGATTCCCTCCTTGTCCTGGATC 361877 Query 46508 TTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCC 46566 ||| ||||| ||| | | | ||||| || ||||| || | ||||| || || || Sbjct 361878 TTCGCCTTGA-CGTTGTCGATGGTGTCCGAAGACTCCACCTCGAGGGTGATAGTCTTCCC 361936 Query 46567 CGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| ||| || || ||||| ||||| Sbjct 361937 GGTCAACGTCTTGACGAAGATCTGCAT 361963 Score = 107 bits (118), Expect = 2e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 46397 GTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCG 46456 || |||||||| ||||| ||||||||||| || || || | || || |||||||| || Sbjct 362327 GTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGTGTCCGACCATCCTCAAGCTGCTTACCA 362386 Query 46457 GCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTG 46516 ||||| || | ||||||||| || | || | | |||||| ||| |||||| ||| Sbjct 362387 GCGAAGATGAGGCGCTGCTGATCCGGGGGAATACCCTCCTTATCCTGGATCTTGGCCTTT 362446 Query 46517 AGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGT 46575 | ||| | | | ||||| || ||||| || | ||| ||||| || || || || || Sbjct 362447 A-CGTTGTCGATGGTGTCCGAAGACTCCACCTCGAGCGTAATGGTCTTCCCAGTGAGGGT 362505 Query 46576 TTTAACAAAGATTTGCAT 46593 || |||||||| ||||| Sbjct 362506 CTTGACAAAGATCTGCAT 362523 Score = 105 bits (116), Expect = 8e-18 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 46388 AGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGC 46447 ||||| | || |||||||| ||||| ||||||||||| || ||||| | || |||||| Sbjct 362040 AGATGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGACCATCCTCGAGC 362099 Query 46448 TGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATC 46507 |||||||| || || |||| || |||||||| | || | | ||||||||| ||| Sbjct 362100 TGCTTGCCAGCAAAGATCAGACGTTGCTGGTCAGGTGGAATACCCTCCTTGTCTTGAATC 362159 Query 46508 TTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCC 46567 || ||||| | | | ||||| || || || || | || || || |||||| Sbjct 362160 TTTGCCTTGACATTGTCGATGGTGTCAGAAGACTCAACCTCAAGGGTAATAGTCTTGCCC 362219 Query 46568 GTCAGCGTTTTAACAAAGATTTGCAT 46593 || || || || || ||||| ||||| Sbjct 362220 GTAAGAGTCTTCACGAAGATCTGCAT 362245 Score = 96.9 bits (106), Expect = 4e-15 Identities = 80/98 (82%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 46388 AGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGC 46447 ||||| | || |||||||| || || |||||||| || ||||| ||| | || |||||| Sbjct 362602 AGATGAAGGGTGCTCTCCTTCTGAATGTTGTAGTCAGAAAGAGTACGCCCATCCTCGAGC 362661 Query 46448 TGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGG 46485 |||||||||||||| || | |||||||||||| | ||| Sbjct 362662 TGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCAGGCGG 362699 >seq1666 Length=152845 Score = 91.5 bits (100), Expect = 2e-13 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| |||||||| |||| || ||||||||||||||||| Sbjct 77745 CTCCTTCTGGATGTTGTAGTCACTGAGAGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAA 77804 Query 46462 TATCAAGCGCTGCTGGTCGG 46481 ||||||||||| ||||||| Sbjct 77805 GATCAAGCGCTGTTGGTCGG 77824 >seq679 Length=256444 Score = 87.8 bits (96), Expect = 2e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| || || ||||| |||| |||||||||||||| ||||| Sbjct 229226 CTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCTGCGAA 229285 Query 46462 TATCAAGCGCTGCTGGTC 46479 || | |||||||||||| Sbjct 229286 GATGAGGCGCTGCTGGTC 229303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565223011384560