Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fomitopsis_20pinicola_20[genbank_20GCA_5F001931775.1_202017-01-04] 2,178 sequences; 45,982,938 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq1 340 2e-88 seq1836 131 2e-25 seq117 107 2e-18 seq1666 95.1 1e-14 seq679 95.1 1e-14 >seq1 Length=925270 Score = 340 bits (376), Expect = 2e-88 Identities = 460/634 (73%), Gaps = 13/634 (2%) Strand=Plus/Minus Query 132814 TGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGCTC-GGCCGTTG 132872 ||||||||| | || || ||||||| ||| | | || ||| || | | || || | Sbjct 580819 TGCTCGATGTCAACAGCCTCGGTGATGATGCGCTTCACT-GCGTCGGGGTGAGGACGGCG 580761 Query 132873 CACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAAT 132932 | || || |||| | ||||||||| |||||| |||| ||||||||| | | || Sbjct 580760 CTTCAGGTGGGTGAAGAGCAAGCAAGCGAAGTCGGTGTGCATGCCCTCGTCACGGCTGAT 580701 Query 132933 GAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGC 132992 || ||||| ||| || | ||| |||||||| || || || |||||||| || || | Sbjct 580700 CAGCTCGTTAGAGAACGTGAGGCCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATCGA 580641 Query 132993 GGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCC 133052 || || ||| || ||||||| ||||||||||| |||||||| || || |||||| | Sbjct 580640 CGCAAAGGAGCCAGAGAAGAAGATACCCTCGACGGCAGCGAAAGCGACGAGACGCTCGGC 580581 Query 133053 GAACGTGG-CTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGC 133111 ||| | | | || ||| |||||||||| || ||||| || ||||| | ||||| || Sbjct 580580 GAAGCTCGACCGCTCGTCTG-CGATCCAGCGGAGGGCCCAGTCCGCCTTCTTTTTGATGC 580522 Query 133112 ACGGCATCGTTTCGATGGCGTTCAACAAACGGAGTTT---CTCTTCCGAGGAACGCACGT 133168 | || || || |||||||| | || | || | | || | || | | || Sbjct 580521 AAGGGATGGTGTCGATGGCATCGAAGA---GGTGCTCGCGCTGCTTCGGGTCCTTGATGT 580465 Query 133169 AGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGC 133228 |||||||||||||| ||||||| | || ||||| | ||||||||| ||| || |||| Sbjct 580464 AGGTGTCGATGAGGAGCGAATACGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGC 580405 Query 133229 CGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTT 133288 |||| ||||| || ||||| | ||||||| || | | |||||| ||||| || |||| Sbjct 580404 CGTAGAAGCATCGTGCCTCAGCAGCCTGCACCTCGTTGGAGAAACGTTCGACAAGGTTTT 580345 Query 133289 CGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCT 133348 ||||||| || ||||| ||| ||||||||||| || |||||| |||||| || |||| Sbjct 580344 CGTTGACAATACCGTCAGAGGCAGCGAAAAAGGCGAGGACGTGCGAGATGAAGTGACGCT 580285 Query 133349 CGTTGTCGTTCAAGCG---CTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGA 133405 |||||||||||| || | ||||||| | |||||| |||||||| | |||||||| Sbjct 580284 CGTTGTCGTTCATACGGTTGTTCCAGTCGTGGAGGTCCTTCGACAGGTCGATCTCCTCGA 580225 Query 133406 CGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 | ||||| || || ||||| || || |||||||| Sbjct 580224 CAGTCCAGAAAGAGGCCTCAGCCTTCTTGTACAT 580191 Score = 302 bits (334), Expect = 4e-77 Identities = 406/562 (72%), Gaps = 5/562 (1%) Strand=Plus/Plus Query 132891 CAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGT 132950 |||||| || ||||| |||| |||||||| | | ||| | ||||| ||| || Sbjct 578322 CAAGCATGCGAAGTCCGTGTGCATTCCCTCGTCGCGGATAATCAACTCGTTTGAGAATGT 578381 Query 132951 CAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAA 133010 || |||||||||||||||||||| |||||||| |||||||||||||| ||| || || Sbjct 578382 CAGTCCGGGCATGAGGCCGCGTTTCTTGAGCCAGAATATGGCGGCGAACGAGCCGGAGAA 578441 Query 133011 GAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTC-GCCGAACGTGGCTTCTTTGC 133069 |||| |||||| ||||| ||||| |||||||| ||||| || ||| | | ||| | Sbjct 578442 AAAGATGCCCTCCACGGCGGCGAAGGCCACCAGTCGCTCAGCGAAACTCGACCGCTTGTC 578501 Query 133070 TGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGG 133129 | ||||||||||| || ||||| || ||||| | |||| ||| || || | ||||||| Sbjct 578502 T-GCGATCCAGCGGAGAGCCCAGTCCGCCTTCTTCTTGATGCATGGTATTGCCTCGATGG 578560 Query 133130 CGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGCACGTAGGTGTCGATGAGGGTCGAAT 133189 ||| || | |||| |||| || | | ||| || ||||| ||| ||| | Sbjct 578561 CGTCAAATAGACGGTCGCGTTCTTGCGGGTCCTTGATGTATGTATCGATTAGGAGCGAGT 578620 Query 133190 ACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGA 133249 | |||| || |||| ||||||||| |||||| |||||||| || ||||| || || Sbjct 578621 ATGTTTCGGAATGTATGTTCTCCATCATGATTTGGAAGCCGTAGAAACACCGTGCTTCCG 578680 Query 133250 CCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGG 133309 | ||||||| || | | ||| ||||| || || || ||||| || ||||| ||| | Sbjct 578681 CAGCCTGCACCTCGTTCGAGAAGCGCTCTACGAGGTTCTCGTTCACTATGCCATCGGATG 578740 Query 133310 CGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGC---GCT 133366 | ||||| ||||| || ||||| ||||||||| ||||||| |||||| | || | | Sbjct 578741 CAGCGAAGAAGGCGAGGACGTGTGAGATGAAATGTCGCTCGTCGTCGTTGAGGCGATGGT 578800 Query 133367 CCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGG 133426 |||||| | ||| | ||||| || | ||| || | ||||| || || ||||| | Sbjct 578801 TCCAGTCCCAGTGGTCGTGCGACAGATCTATCTCTTCTGCTGTCCAGAAAGAGGCCTCCG 578860 Query 133427 CTTTTTTGTACATACTCCACAT 133448 ||| |||||||| | ||| || Sbjct 578861 CTTGCTTGTACATGCGCCATAT 578882 >seq1836 Length=575610 Score = 131 bits (144), Expect = 2e-25 Identities = 159/213 (75%), Gaps = 3/213 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || ||||||||||| || ||||| |||| |||||| | || Sbjct 191894 ATGCAAATCTTCGTCAAGACTCTCACGGGCAAGACGATCACGCTCGAAGTCGAGTCGTCC 191835 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | || |||| | || | || |||| ||||| ||||| || || |||| || Sbjct 191834 GACACGATTGACAACG-TGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCTCCCGATCA 191776 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || |||| |||||||| ||| |||| |||| ||||| || |||||||| Sbjct 191775 GCAGCGCCTGATTTTTGCGGGCAAGCAGTTGGAAGACGGCCGCACGCTGTCTGACTACAA 191716 Query 38423 CATCCAAAAGGAAGCGACGCTGCAT-TTGGTGC 38454 |||||| ||||| | || || ||| | ||||| Sbjct 191715 CATCCAGAAGGAGTCAACCCTTCATCTCGGTGC 191683 Score = 125 bits (138), Expect = 7e-24 Identities = 159/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||||||||| || ||||| |||| |||||| | || Sbjct 192122 ATGCAGATCTTCGTTAAGACTCTCACGGGCAAGACGATCACGCTCGAAGTCGAGTCGTCC 192063 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | || |||| | || | || |||| ||||| ||||| || || ||||||| Sbjct 192062 GACACGATTGACAACG-TGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCTCCCGACCA 192004 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| | || | ||||||||| ||||| || || | |||||||| ||| ||||| Sbjct 192003 GCAGCGCTTGATCTTCGCGGGCAAGCAGCTCGAGGATGGCCGCACCCTGTCCGATTACAA 191944 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||| ||||| | || || || | ||||| || Sbjct 191943 CATCCAGAAGGAGTCCACCCTTCACCTTGTGCTTCG 191908 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||||||||| || ||||||||||| || ||||| || | || || ||| || || Sbjct 191611 ATGCAAATATTCGTCAAGACGCTCACGGGAAAGACCATAACGCTGGAGGTTGAGTCCTCC 191552 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | | |||| | || | ||| |||| || || ||||| || || |||| || Sbjct 191551 GATACCATCGACAACG-TCAAGGCAAAGATCCAGGATAAGGAGGGCATCCCTCCCGATCA 191493 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| ||||| | ||| || |||||| |||| |||| || || || ||||||||| Sbjct 191492 GCAGCGCCTCATCTTCGCCGGGAAACAGTTGGAAGACGGCCGGACGCTGTCCGACTACAA 191433 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || || ||||| |||| || || | || || || ||| | || || Sbjct 191432 TATTCAGAAGGAGTCGACCCTCCACCTTGTCCTCCGGTTGCGCGGTGG 191385 Score = 105 bits (116), Expect = 7e-18 Identities = 155/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || ||||| || || || |||||||| | || |||||| | | Sbjct 191383 ATGCAGATCTTCGTGAAGACGCTTACCGGGAAGACCATCACGTTGGAGGTCGAGTCTTCG 191324 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | || | || |||| || || ||||| || || ||||||| Sbjct 191323 GACACGATCGACAACG-TCAAGGCGAAGATCCAAGATAAGGAGGGTATCCCGCCCGACCA 191265 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || ||||| | ||| || || ||||| || |||| || || || ||||| || Sbjct 191264 GCAACGTCTCATCTTCGCTGGGAAGCAGCTTGAGGACGGCCGTACTCTTTCGGACTATAA 191205 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||| ||||| ||||||||||| | || || ||| Sbjct 191204 CATCCAGAAGGAGTCGACGCTGCATCTCGTCCTCCGT 191168 Score = 102 bits (112), Expect = 8e-17 Identities = 147/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || ||| | || || || || ||||| | || |||||| | || Sbjct 191155 ATGCAGATTTTTGTGAAGACGTTGACCGGGAAGACGATCACTCTTGAGGTCGAGTCGTCC 191096 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | || |||| | || | ||||||| ||||| ||||| |||||| | ||||| Sbjct 191095 GACACGATTGACAACG-TCAAGGCGAAAATCCAGGACAAGGAGGGTATTCCCCCAGACCA 191037 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| ||||| | ||| || || ||| |||| |||| | || || || ||||| Sbjct 191036 GCAGCGTCTCATCTTCGCTGGGAAGCAGTTGGAGGACGGCAGGACGCTTTCGGATTACAA 190977 Query 38423 CATCCAAAAGGAAGCGACGCTGCAT 38447 |||||||||||| | || || ||| Sbjct 190976 CATCCAAAAGGAGTCCACCCTTCAT 190952 >seq117 Length=384797 Score = 107 bits (118), Expect = 2e-18 Identities = 150/205 (73%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || ||| | || || || || |||||| |||| || ||| | | Sbjct 361963 ATGCAGATCTTCGTCAAGACGTTGACCGGGAAGACTATCACCCTCGAGGTGGAGTCTTCG 361904 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| |||||||| || | ||||| Sbjct 361903 GACACCATCGACAACG-TCAAGGCGAAGATCCAGGACAAGGAGGGAATCCCTCCAGACCA 361845 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| ||||| | ||| || || ||||| || |||| ||| ||||| |||||||| Sbjct 361844 GCAGCGCCTCATCTTCGCTGGGAAGCAGCTCGAAGACGGGCGGACCCTGTCTGACTACAA 361785 Query 38423 CATCCAAAAGGA-AGCGACGCTGCA 38446 ||| || ||||| ||| || ||||| Sbjct 361784 CATTCAGAAGGAGAGC-ACACTGCA 361761 Score = 100 bits (110), Expect = 3e-16 Identities = 151/211 (72%), Gaps = 3/211 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || |||||||| || || ||| | || || ||| | | Sbjct 362245 ATGCAGATCTTCGTGAAGACTCTTACGGGCAAGACTATTACCCTTGAGGTTGAGTCTTCT 362186 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | ||| || | ||||| ||||| ||||| | ||||| Sbjct 362185 GACACCATCGACAATGTCAAGGCAAAGATTCAAGACAAGGAGGGTATTCCACCTGACCAG 362126 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || || || | || ||||| ||||| || || | ||||| ||| |||||||||| Sbjct 362125 CAACGTCTGATCTTTGCTGGCAAGCAGCTCGAGGATGGTCGCACGCTCTCCGACTACAAC 362066 Query 38424 ATCCAAAAGGA-AGCGACGCTGCAT-TTGGT 38452 ||||| ||||| ||| || || ||| ||||| Sbjct 362065 ATCCAGAAGGAGAGC-ACTCTCCATCTTGGT 362036 Score = 98.7 bits (108), Expect = 1e-15 Identities = 148/205 (72%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || ||||| || || ||||| || |||| || ||| | | Sbjct 362523 ATGCAGATCTTTGTCAAGACCCTCACTGGGAAGACCATTACGCTCGAGGTGGAGTCTTCG 362464 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| || || ||||| |||||| | || || Sbjct 362463 GACACCATCGACAACG-TAAAGGCCAAGATCCAGGATAAGGAGGGTATTCCCCCGGATCA 362405 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| ||||| | ||| || || ||||| || || | || || ||| ||||||||| Sbjct 362404 GCAGCGCCTCATCTTCGCTGGTAAGCAGCTTGAGGATGGTCGGACACTCTCCGACTACAA 362345 Query 38423 CATCCAAAAGGA-AGCGACGCTGCA 38446 |||||| ||||| ||| ||||| || Sbjct 362344 CATCCAGAAGGAGAGC-ACGCTTCA 362321 >seq1666 Length=152845 Score = 95.1 bits (104), Expect = 1e-14 Identities = 90/115 (78%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 38356 CCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACG 38415 ||||||||||||| | || | ||| ||||| |||||||| |||| ||||| |||| | Sbjct 77824 CCGACCAACAGCGCTTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACTCTCAGTG 77765 Query 38416 ACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||||||| ||||| | || || || |||||||| ||| || | || || Sbjct 77764 ACTACAACATCCAGAAGGAGTCCACCCTACACTTGGTGCTCCGTCTGCGTGGTGG 77710 >seq679 Length=256444 Score = 95.1 bits (104), Expect = 1e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 38349 ATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACC 38408 || ||| | ||||| ||||| ||||| | ||| ||||| ||||| || |||| |||||| Sbjct 229312 ATCCCCCCAGACCAGCAGCGCCTCATCTTCGCAGGCAAGCAGCTCGAGGACGGCCGCACC 229253 Query 38409 CTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||| |||||||||||||| ||||| |||| ||||| ||||| || || Sbjct 229252 CTCTCGGACTACAACATCCAGAAGGAGTCGACCCTGCACTTGGTCCTCCG 229203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500159182795520