Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fomitopsis_20pinicola_20[genbank_20GCA_5F001931775.1_202017-01-04] 2,178 sequences; 45,982,938 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq1722 208 1e-48 seq163 136 5e-27 >seq1722 Length=776992 Score = 208 bits (230), Expect = 1e-48 Identities = 258/353 (73%), Gaps = 0/353 (0%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| || ||||| || | ||| ||||| || ||||| || ||||| || |||||||| Sbjct 273384 TCGAAGTCCTCACCGCCAAGGTGAGTATCTCCGGCGGTGGCCTTGACCTCGAAGATACCC 273325 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | || || | | | || ||||| || ||||| || || || || || || || ||| Sbjct 273324 TCCTCGATCGTGAGGAGTGACACATCGAATGTACCTCCGCCGAGATCGAAGATCAGGACG 273265 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 || ||| | || | ||||| ||||||||||| ||||||||||| ||||| || || Sbjct 273264 TTGCGCTCGCCCTCAGTCTTCTTGTCGAGACCGTATGCGATAGCCGCTGCCGTCGGCTCG 273205 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 || || ||||| || ||| || |||| || ||| | ||||| ||||| || || ||| Sbjct 273204 TTGATGATACGGAGGACGTTGAGACCAGAGATGGTTCCTGCATCCTTCGTTGCCTGACGT 273145 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756 ||||||||||| |||||||| ||||| || ||||| || | ||||| || | ||||| Sbjct 273144 TGCGAATCGTTGAAGTAGGCGGGGACGGTGACGACAGCATTTGTGACCGTCGTTCCGAGG 273085 Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTC 7809 ||||| || || | || ||||| ||| | || ||| || || ||||| || Sbjct 273084 TACGACTCAGCCGTCTCCTTCATCTTGAGCAAAATCATGGACGAGATCTCCTC 273032 Score = 136 bits (150), Expect = 5e-27 Identities = 527/823 (64%), Gaps = 10/823 (1%) Strand=Plus/Minus Query 6575 TCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGATAATCTC 6634 ||| | || ||||| || || || | |||||| || || || || ||||| | | Sbjct 274319 TCACCCTTGTACTTCTCGGCCTCGTTGACCATGCGCTCGATCTCCTCCTTCGACAGACGG 274260 Query 6635 CCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCAGCACTT 6694 ||||| || || || || || ||| | || || || | | ||| || | || Sbjct 274259 CCCTTGTCGTTGGTGATGGTGATCCGGTTCGACTTGCCGGTCGTCTTGTCGGCCGCGGAG 274200 Query 6695 ACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTACCCCTC 6754 || || | ||||||||| || || | |||||| | || | ||||| || ||| | Sbjct 274199 ACGTTGAGAATACCATTGGCGTCGATATCGAAGGTGACCTCGATTTGAGGAACACCACGA 274140 Query 6755 GGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTCGCCTTC 6814 || || | ||||| || | | || || | || || | |||| ||| ||| | | Sbjct 274139 GGCGCCGGAGGAATGCCAGAGAGCTCGAACTTGCCGAGGAGGTTGTTGTCCTTCGTCCGC 274080 Query 6815 TTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCCGTTGAG 6874 ||| ||||| || ||||| | || || |||| || || || || ||| Sbjct 274079 GCACGCTCACCCTCGTAGACCTGGATCAAGACACCAGGCTGGTTGTCGGAGTAGGTCGAG 274020 Query 6875 AAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTCATAATA 6934 ||||| | ||||| | || | ||||| || | | || | | |||||| | | Sbjct 274019 AAGATCTCGGACTTCTTCGTCGGGACGGTCGTGTTCCGCTTGATGAGAGCGGTCATGACA 273960 Query 6935 CCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGGTCTTGA 6994 || || || |||| || ||||| || || | || || | || | ||||| ||| Sbjct 273959 CCGCCTGCGGTCTCGATACCGAGAGAAAGCGGCGAAACATCGAGAAGGAGAAGGTCCTGA 273900 Query 6995 ACAGATTCGTTCCCT----TCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGC 7050 ||| ||| ||||| | | ||| || || ||||| | || ||||| || Sbjct 273899 GTC--TTC--TCCGAGGTGTCACCGGAGAGGATCGCCGCCTGGACGGCGGCACCGTAGGC 273844 Query 7051 GACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAA 7110 ||| |||||||||||||| || | || || | || || ||||| || | || || | Sbjct 273843 GACGGCCTCATCGGGGTTGATGCTCTTGTTGGGCTCCTTGCCGTTGAAGAAGTCGGAGAC 273784 Query 7111 C-ATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTT 7169 | | || || || |||||||| || || || || ||||| | ||||| || | || | Sbjct 273783 CAACTTCATG-ATCTTCGGGATACGAGTGGAACCGCCGACAAGGACGATCTCGTGGACCT 273725 Query 7170 TCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGA 7229 || |||||||| ||||| || || ||| ||||| || || | | |||||| Sbjct 273724 GGCTCTTGTCGATCTTCGAGTCACGGAGGACTTTCTCGACGGGCTCGAGAGTGCTACGGA 273665 Query 7230 ACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGC 7289 | | ||| | || |||||||| || || ||||| || | ||||| ||||| || | | Sbjct 273664 AGAGGTCATTGCAAAGTTCCTCGAACCGCGCACGCGTGAGCGATGTGTAGAAGTCGATAC 273605 Query 7290 CGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTG 7349 | ||| | | || ||||| || || | || || | | || || | || ||||| | Sbjct 273604 CCTCGAAGAGAGAGTCAATCTCGATCGAAGTCTGGGTGGCGGAGGACAGGGTACGCTTGG 273545 Query 7350 CGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTT 7392 ||||||| || || || || | || || || ||||| ||||| Sbjct 273544 CGCGCTCGCAAGCGGTGCGGAGTCGGCGTAGAGCACGAGGGTT 273502 >seq163 Length=168878 Score = 136 bits (150), Expect = 5e-27 Identities = 192/267 (72%), Gaps = 2/267 (1%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| || |||||||| | ||| || || || ||||| || ||||| | |||| ||| Sbjct 89449 TCGAAGTCCTCACCACCGAGGTGAGTGTCACCTGCGGTAGCCTTGACGGCGAAGACACCA 89390 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 || | ||||| | | || ||||| || || || ||||| || || || ||||| ||| Sbjct 89389 CCAACGATGTTGAGGAGGGAGACATCGAATGTTCCTCCACCAAGATCGAAGATGAGAACG 89330 Query 7577 TTCGTATCG-TCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635 ||| | ||| | ||| || | || || ||||| ||||||||||| ||||| || || Sbjct 89329 TTCTTCTCGCTGGTCGAGGTCCGG-TCCAGGCCGTAGGCGATAGCCGCAGCCGTGGGCTC 89271 Query 7636 ATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCG 7695 || |||||||| ||| | |||||||| ||||| | ||||| || || || | || Sbjct 89270 GTTGATAATACGGAGAACATCAAGGCCAGCGATAGTACCAGCATCCTTGGTGGCCAGACG 89211 Query 7696 TTGCGAATCGTTAAAGTAGGCCGGGAC 7722 || || ||||| ||||| || || || Sbjct 89210 CTGGGAGTCGTTGAAGTAAGCGGGCAC 89184 Score = 86.0 bits (94), Expect = 8e-12 Identities = 96/128 (75%), Gaps = 3/128 (2%) Strand=Plus/Minus Query 7937 CCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTC 7996 ||||| |||||||||||||| || | ||||| || ||||||||||||| ||| || ||| Sbjct 88871 CCGATGAGACGCTTTGCATCGAAGATGGTGTTCTTCGGGTTCATGGCTGCTTGATTTTTC 88812 Query 7997 GCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTT 8056 || || || ||||| ||||| || | | | || |||||||| || || ||||| Sbjct 88811 GCGGCATCGCCGATCAGACGCTCCTCA---GAGGAGAAAGCGACGTAGGACGGCGTCGTG 88755 Query 8057 CGATTCCC 8064 || || || Sbjct 88754 CGGTTACC 88747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635115508509520