Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fomitopsis_20pinicola_20[genbank_20GCA_5F001931775.1_202017-01-04] 2,178 sequences; 45,982,938 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq1 259 9e-64 seq1494 89.7 1e-12 >seq1 Length=925270 Score = 259 bits (286), Expect = 9e-64 Identities = 394/559 (70%), Gaps = 9/559 (2%) Strand=Plus/Minus Query 48123 AGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGA 48182 |||||| ||| || ||||| |||||| ||| ||||| |||||||| ||| |||| |||| Sbjct 580746 AGAGCAAGCAAGCGAAGTCGGTGTGCATGCCCTCGTCACGGCTGATCAGCTCGTTAGAGA 580687 Query 48183 AGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAG 48242 | ||| |||||||||| || | || ||||||||||| || | ||| || ||||||| Sbjct 580686 ACGTGAGGCCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATCGACGCAAAGGAGCCAG 580627 Query 48243 AGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCT 48302 |||||||||| ||||| || || ||||| ||| ||| | ||| |||| | || Sbjct 580626 AGAAGAAGATACCCTCGACGGCAGCGAAAGCGACGAGACGCTCGGCGAAGCTCGACCGCT 580567 Query 48303 TGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTA 48362 ||||| ||||||| || |||||||| |||||||| |||||||| || || || || | Sbjct 580566 CGTCTGCGATCCAGCGGAGGGCCCAGTCCGCCTTCTTTTTGATGCAAGGGATGGTGTCGA 580507 Query 48363 TGGCCCGGAAGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGT---AGTGAGCAGCT 48419 |||| |||||| | || || || | |||| | ||||| |||| ||| Sbjct 580506 TGGCATCGAAGAGGTGCTCGCGCTGCTTCGGGTCCTTGATGTAGGTGTCGATGAGGAGC- 580448 Query 48420 TTGCGTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGG 48479 | ||| |||| ||||| | ||||| || ||||||||| ||||||||| | | Sbjct 580447 --GAATACGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGTG 580390 Query 48480 CCTCAAACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCAT 48539 ||||| ||||||| || ||||||| | || | || || || ||||| || || | Sbjct 580389 CCTCAGCAGCCTGCACCTCGTTGGAGAAACGTTCGACAAGGTTTTCGTTGACAATACCGT 580330 Query 48540 CTGAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGA--- 48596 | || ||||| || ||||| ||||| || | ||| || |||||||||| | | | Sbjct 580329 CAGAGGCAGCGAAAAAGGCGAGGACGTGCGAGATGAAGTGACGCTCGTTGTCGTTCATAC 580270 Query 48597 GAGCATTCCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACG 48656 | |||||| | || | ||| || |||||| | || || ||||||||||| || | Sbjct 580269 GGTTGTTCCAGTCGTGGAGGTCCTTCGACAGGTCGATCTCCTCGACAGTCCAGAAAGAGG 580210 Query 48657 CGAGTGCTTTTTTGTACAT 48675 | || || |||||||| Sbjct 580209 CCTCAGCCTTCTTGTACAT 580191 Score = 228 bits (252), Expect = 2e-54 Identities = 401/580 (69%), Gaps = 8/580 (1%) Strand=Plus/Plus Query 48109 CAGGTGCTTGGCATAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGAT 48168 |||||||| |||||||| ||| || |||||| |||||| || ||||| ||| | || Sbjct 578307 CAGGTGCTG---ATAGAGCAAGCATGCGAAGTCCGTGTGCATTCCCTCGTCGCGGATAAT 578363 Query 48169 GAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGC 48228 | | |||| ||||| || || ||||||| || | | ||||||||||| || || Sbjct 578364 CAACTCGTTTGAGAATGTCAGTCCGGGCATGAGGCCGCGTTTCTTGAGCCAGAATATGGC 578423 Query 48229 CGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCC 48288 ||||| ||||| ||||| |||||||||||||| || ||||| || || | ||| | Sbjct 578424 GGCGAACGAGCCGGAGAAAAAGATGCCCTCCACGGCGGCGAAGGCCACCAGTCGCTCAGC 578483 Query 48289 GAAAGAAGCGTTCTTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCA 48348 |||| | |||||||| ||||||| || |||||||| ||||||||||||||||| Sbjct 578484 GAAACTCGACCGCTTGTCTGCGATCCAGCGGAGAGCCCAGTCCGCCTTCTTCTTGATGCA 578543 Query 48349 TGGCATCGTCTCTATGGCCCGGAAGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGT 48408 ||| || | ||| ||||| || || | || || | |||| | || || Sbjct 578544 TGGTATTGCCTCGATGGCGTCAAATAGACGGTCGCGTTCTTGCGGGTCCTTGATGTATGT 578603 Query 48409 AGTGAGCAGCTTTGCGTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTA 48468 | || || | ||| | || || || | ||||| || ||| ||||| ||||| Sbjct 578604 ATCGATTAGGAGCGAGTATGTTTCGGAATGTATGTTCTCCATCATGATTTGGAAGCCGTA 578663 Query 48469 GAAGGCCCTGGCCTCAAACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATT 48528 ||| || || || ||||||| || | ||||| | ||| | || ||||| || Sbjct 578664 GAAACACCGTGCTTCCGCAGCCTGCACCTCGTTCGAGAAGCGCTCTACGAGGTTCTCGTT 578723 Query 48529 GACTATCCCATCTGAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTT 48588 ||||| ||||| || ||||| |||||||| ||||| ||| | |||||| ||||||| Sbjct 578724 CACTATGCCATCGGATGCAGCGAAGAAGGCGAGGACGTGTGAGATGAAATGTCGCTCGTC 578783 Query 48589 GTGGGTGA---GAGCATTCCAG-CCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAG 48644 || | ||| || |||||| ||| || ||| | ||| || | ||||| | | Sbjct 578784 GTCGTTGAGGCGATGGTTCCAGTCCCAGT-GGTCGTGCGACAGATCTATCTCTTCTGCTG 578842 Query 48645 TCCAGAAGGACGCGAGTGCTTTTTTGTACATGCCCCATAT 48684 ||||||| || || |||| |||||||||| |||||| Sbjct 578843 TCCAGAAAGAGGCCTCCGCTTGCTTGTACATGCGCCATAT 578882 >seq1494 Length=22227 Score = 89.7 bits (98), Expect = 1e-12 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 212687 CAGATGTAGGTTCAGGGACTGACTCTGGTCTATGAATGGGGCCCTGTCAGCGGCCATGTC 212746 ||| || | ||| ||| |||||||||||| ||||| | | | | ||| || |||||||| Sbjct 19631 CAGGTGCACGTTGAGGCTCTGACTCTGGTCAATGAACGCGCCGCGGTCGGCAGCCATGTC 19572 Query 212747 TATGATATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGG 212806 | || | ||||| || |||||| || |||||| |||| | |||| ||| || || Sbjct 19571 GAGAATCTTCTTCTGGCTGATCTCCCAAACCGTCTTGTAGATCGCCTTGACGTCGTCAGG 19512 Query 212807 GAAGCCGGGGATGTTCTGCACAGACCC 212833 || || | |||||||||||| || || Sbjct 19511 GATGCTAGAGATGTTCTGCACGGAGCC 19485 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931507439019520