Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fomitopsis_20pinicola_20[genbank_20GCA_5F001931775.1_202017-01-04] 2,178 sequences; 45,982,938 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq1722 190 3e-43 seq117 187 3e-42 seq1836 170 3e-37 >seq1722 Length=776992 Score = 190 bits (210), Expect = 3e-43 Identities = 257/358 (72%), Gaps = 0/358 (0%) Strand=Plus/Plus Query 195630 CTCCCGAAGAAATTTCGTCTATGGTGTTGATTAAGATGAAGGAGACTGCGGAATCTTTCA 195689 ||||||| || || ||||| ||| | ||| | |||||||||||||| || || || | | Sbjct 273027 CTCCCGAGGAGATCTCGTCCATGATTTTGCTCAAGATGAAGGAGACGGCTGAGTCGTACC 273086 Query 195690 TGGGTAAAACTGTGAAAGATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAAC 195749 | || | || || | | |||| || || || || || || ||||||| ||||| |||| Sbjct 273087 TCGGAACGACGGTCACAAATGCTGTCGTCACCGTCCCCGCCTACTTCAACGATTCGCAAC 273146 Query 195750 GACAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTAAACTGTCTTAGAATTATCAATG 195809 | ||||| || ||||| || | | || | ||||| ||| || | || ||||| | Sbjct 273147 GTCAGGCAACGAAGGATGCAGGAACCATCTCTGGTCTCAACGTCCTCCGTATCATCAACG 273206 Query 195810 AACCAACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAACAAGGACGAAGATAAAAATG 195869 | || || || || || || || || ||||| |||||||| | || | || || | Sbjct 273207 AGCCGACGGCAGCGGCTATCGCATACGGTCTCGACAAGAAGACTGAGGGCGAGCGCAACG 273266 Query 195870 TATTGATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTG 195929 | ||||||| |||||||| || ||||| || ||||| ||||| |||| || || | | Sbjct 273267 TCCTGATCTTCGATCTCGGCGGAGGTACATTCGATGTGTCACTCCTCACGATCGAGGAGG 273326 Query 195930 GTATATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGA 195987 |||| ||||| || ||||| || || || |||||||| || || ||||| || ||||| Sbjct 273327 GTATCTTCGAGGTCAAGGCCACCGCCGGAGATACTCACCTTGGCGGTGAGGACTTCGA 273384 Score = 122 bits (134), Expect = 1e-22 Identities = 138/185 (75%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 195332 TGTGTTGGTGTATGGCAAAATGATCGTGTAGAGATTATCCCGAATGACCAAGGAAACCGT 195391 || || ||||| ||||| || |||||||| ||||| ||| | || ||||| || ||||| Sbjct 272672 TGCGTCGGTGTCTGGCAGAACGATCGTGTTGAGATCATCGCCAACGACCAGGGTAACCGC 272731 Query 195392 ACAACTCCATCGTACGTTGCCTTTACAGATAATGAACGTCTCGTTGGAGATGCCGCAAAA 195451 || || || ||||| || ||||| | || || || || | | || |||||||| ||| Sbjct 272732 ACGACGCCCTCGTATGTCTCCTTTTCCGACAACGAGCGGTTGATCGGCGATGCCGCGAAA 272791 Query 195452 AATCAGACAGCTATGAACCCTATCAATACTGTCTTTGACGCGAAGCGTCTTATTGGTCGC 195511 || || ||||||||||| ||| || || || || ||||||||||| || |||||| Sbjct 272792 AACCAAGTCGCTATGAACCCCCACAACACCGTTTTCGATGCGAAGCGTCTCATCGGTCGC 272851 Query 195512 AAGTT 195516 || || Sbjct 272852 AAATT 272856 >seq117 Length=384797 Score = 187 bits (206), Expect = 3e-42 Identities = 169/213 (79%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 171857 GTAGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGT 171916 || ||||||| ||||| ||||| || ||||| || || ||||| ||||| |||||||||| Sbjct 362250 GTGGTATGCAGATCTTCGTGAAGACTCTTACGGGCAAGACTATTACCCTTGAGGTTGAGT 362191 Query 171917 CGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCG 171976 | || ||||| ||||| || |||| || ||||||||||| ||||| || |||||||| | Sbjct 362190 CTTCTGACACCATCGACAATGTCAAGGCAAAGATTCAAGACAAGGAGGGTATTCCACCTG 362131 Query 171977 ATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATT 172036 | |||||||| || || |||||||| || ||||| || ||||| || || ||| | || | Sbjct 362130 ACCAGCAACGTCTGATCTTTGCTGGCAAGCAGCTCGAGGATGGTCGCACGCTCTCCGACT 362071 Query 172037 ACAACGTTCAAAAGGAGTCTACTCTACACCTTG 172069 ||||| | || |||||| ||||| || |||| Sbjct 362070 ACAACATCCAGAAGGAGAGCACTCTCCATCTTG 362038 Score = 163 bits (180), Expect = 4e-35 Identities = 162/210 (77%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 171860 GTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGT 171919 ||||||| ||||| || || || | || || || ||||||||||||||||| ||||| | Sbjct 361965 GTATGCAGATCTTCGTCAAGACGTTGACCGGGAAGACTATCACCCTCGAGGTGGAGTCTT 361906 Query 171920 CAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATC 171979 | ||||| ||||| ||| |||| || ||||| || || ||||| || || || || || | Sbjct 361905 CGGACACCATCGACAACGTCAAGGCGAAGATCCAGGACAAGGAGGGAATCCCTCCAGACC 361846 Query 171980 AGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACA 172039 |||| || || || || ||||| || ||||| ||||| || || ||||| |||| |||| Sbjct 361845 AGCAGCGCCTCATCTTCGCTGGGAAGCAGCTCGAAGACGGGCGGACCCTGTCTGACTACA 361786 Query 172040 ACGTTCAAAAGGAGTCTACTCTACACCTTG 172069 || |||| |||||| || || ||||||| Sbjct 361785 ACATTCAGAAGGAGAGCACACTGCACCTTG 361756 Score = 154 bits (170), Expect = 2e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| || || || | || || || || ||||| ||||||||||||||||| Sbjct 361685 ATGCAGATCTTCGTCAAGACGTTGACCGGGAAGACGATCACTCTCGAGGTTGAGTCGTCG 361626 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| ||| |||| || |||||||| || ||||| |||||||| || || ||| Sbjct 361625 GACACCATCGACAACGTCAAGGCGAAGATTCAGGACAAGGAGGGCATTCCGCCTGACCAG 361566 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || || || || ||||| || ||| | || || || ||||| || | ||||| ||| Sbjct 361565 CAGCGCCTGATCTTCGCTGGCAAGCAGTTGGAGGACGGCCGTACTCTTTCGGATTATAAC 361506 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 | || |||||| || || ||||| || || | || || || ||| Sbjct 361505 ATCCAGAAGGAGAGCACGCTCCACCTCGTGCTGCGTCTCCGTGGCGGT 361458 Score = 116 bits (128), Expect = 5e-21 Identities = 96/117 (82%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 171849 ATATACTAGTAGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGA 171908 ||| ||| | |||||||| ||||||||||| ||||| || || || || ||||||||||| Sbjct 362889 ATACACTCGCAGTATGCAGATCTTTGTGAAGACCCTCACCGGCAAGACCATCACCCTCGA 362830 Query 171909 GGTTGAGTCGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGG 171965 ||| ||||| || ||||| ||||| ||| | || |||||||| || |||||||| || Sbjct 362829 GGTCGAGTCCTCTGACACCATCGACAACGTGAAGGCCAAGATCCAGGATAAGGAGGG 362773 >seq1836 Length=575610 Score = 170 bits (188), Expect = 3e-37 Identities = 177/232 (76%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 171857 GTAGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGT 171916 || ||||||| ||||| ||||| || ||||| || || || ||||| | ||||| |||| Sbjct 191388 GTGGTATGCAGATCTTCGTGAAGACGCTTACCGGGAAGACCATCACGTTGGAGGTCGAGT 191329 Query 171917 CGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCG 171976 | || ||||| ||||| ||| |||| || ||||| ||||||||||| || || || |||| Sbjct 191328 CTTCGGACACGATCGACAACGTCAAGGCGAAGATCCAAGATAAGGAGGGTATCCCGCCCG 191269 Query 171977 ATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATT 172036 | |||||||| || || || ||||| || |||||||| || || ||||| || | || | Sbjct 191268 ACCAGCAACGTCTCATCTTCGCTGGGAAGCAGCTTGAGGACGGCCGTACTCTTTCGGACT 191209 Query 172037 ACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088 | ||| | || |||||||| || || || || || || | ||||| || || Sbjct 191208 ATAACATCCAGAAGGAGTCGACGCTGCATCTCGTCCTCCGTCTTCGTGGAGG 191157 Score = 168 bits (186), Expect = 9e-37 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| || || || || || || ||||| || || || || ||||||||||| || Sbjct 191611 ATGCAAATATTCGTCAAGACGCTCACGGGAAAGACCATAACGCTGGAGGTTGAGTCCTCC 191552 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || || ||||| ||| |||| || ||||| || |||||||| ||||| || ||||||||| Sbjct 191551 GATACCATCGACAACGTCAAGGCAAAGATCCAGGATAAGGAGGGCATCCCTCCCGATCAG 191492 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || || || || || || |||||| | ||||| || || || || | || ||||| Sbjct 191491 CAGCGCCTCATCTTCGCCGGGAAACAGTTGGAAGACGGCCGGACGCTGTCCGACTACAAT 191432 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 |||| |||||||| || || |||||||| || || | || |||||| Sbjct 191431 ATTCAGAAGGAGTCGACCCTCCACCTTGTCCTCCGGTTGCGCGGTGGT 191384 Score = 159 bits (176), Expect = 5e-34 Identities = 160/208 (77%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 171860 GTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGT 171919 ||||||||||||| || || || || || || || || ||||| ||||| || ||||||| Sbjct 191896 GTATGCAAATCTTCGTCAAGACTCTCACGGGCAAGACGATCACGCTCGAAGTCGAGTCGT 191837 Query 171920 CAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATC 171979 | ||||| || || ||| | || || ||||| || || ||||| ||||| || ||||||| Sbjct 191836 CCGACACGATTGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCTCCCGATC 191777 Query 171980 AGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACA 172039 |||| || || |||||||| || || ||| | ||||| || || || || |||| |||| Sbjct 191776 AGCAGCGCCTGATTTTTGCGGGCAAGCAGTTGGAAGACGGCCGCACGCTGTCTGACTACA 191717 Query 172040 ACGTTCAAAAGGAGTCTACTCTACACCT 172067 || | || |||||||| || || || || Sbjct 191716 ACATCCAGAAGGAGTCAACCCTTCATCT 191689 Score = 132 bits (146), Expect = 6e-26 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || |||||||| || | || || || || ||||| || ||||| |||||||| Sbjct 191155 ATGCAGATTTTTGTGAAGACGTTGACCGGGAAGACGATCACTCTTGAGGTCGAGTCGTCC 191096 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || || ||| |||| || || || || || ||||| || ||||| || || ||| Sbjct 191095 GACACGATTGACAACGTCAAGGCGAAAATCCAGGACAAGGAGGGTATTCCCCCAGACCAG 191036 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || || || || ||||| || ||| | || || || | || || | ||||||||| Sbjct 191035 CAGCGTCTCATCTTCGCTGGGAAGCAGTTGGAGGACGGCAGGACGCTTTCGGATTACAAC 190976 Query 172042 GTTCAAAAGGAGTCTACTCTACACCT 172067 | ||||||||||| || || || || Sbjct 190975 ATCCAAAAGGAGTCCACCCTTCATCT 190950 Score = 93.3 bits (102), Expect = 6e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || || ||||| ||||| || || || || ||||| || ||||| ||||| || Sbjct 192405 ATGCAGATTTTCGTGAAGACCCTCACCGGCAAGACCATCACGCTTGAGGTCGAGTCCTCT 192346 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGG 171965 ||||| ||||| || | ||||||||||| ||||||||||| || Sbjct 192345 GACACGATCGACAATGTGAAAGCCAAGATCCAAGATAAGGAGGG 192302 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657844489696160