Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fomitopsis_20pinicola_20[genbank_20GCA_5F001931775.1_202017-01-04] 2,178 sequences; 45,982,938 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1121 91.5 4e-13 >seq1121 Length=1100126 Score = 91.5 bits (100), Expect = 4e-13 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 289027 TTACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATT 289086 || |||| ||| ||||||||||||||||||| | ||||| || | ||||| || Sbjct 614351 TTGCCAATAGCGTCAATTTCGTCAATGAAAACGATGGCCGGAGCGTTCTTCTTCGCAGTT 614410 Query 289087 GCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAA 289146 ||||| | || | || || |||| |||| ||| || |||| || || || || || Sbjct 614411 GCAAAGAGATCACGGACTCGCGATGAACCAACACCGACGAACATCTCGACGAACTCGGAG 614470 Query 289147 GCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTC 289206 |||| || | ||| | ||||| || || ||||| ||| | || || |||||| Sbjct 614471 CCGGACACGGAGAAGAAGGGGACATTCGCCTCCCCTGCAGTCGCCTTGGCGAGGAGTGTC 614530 Query 289207 TTACCTGTTCCAGGTGGTCC 289226 ||||| || ||||| ||||| Sbjct 614531 TTACCCGTACCAGGCGGTCC 614550 Score = 84.2 bits (92), Expect = 6e-11 Identities = 108/146 (74%), Gaps = 6/146 (4%) Strand=Plus/Minus Query 251845 ATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGTCCATCA 251904 || |||||||| |||||||| || || ||||||| ||| |||||| | | || || Sbjct 985333 ATCGTCATACGCGACGGAATAGCGTGAGGGTTGATGACGATATCGGGTGTGATACCCTCT 985274 Query 251905 GCAGTGAAGGGCATATCCTTTTCCT--CAATA-ATGTTTCCAATAGTTCCCTTTTGTCCG 251961 |||||||||||||| ||| |||| | || || | ||||| || |||||||| ||| Sbjct 985273 GCAGTGAAGGGCATGTCC---TCCTGGCGGTACGTGATACCAATGGTACCCTTTTGACCG 985217 Query 251962 TGACGAGAACTGAACTTATCACCAAT 251987 || || || |||||| ||||| || Sbjct 985216 TGTCGGGACGCGAACTTGTCACCGAT 985191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471776528009986