Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fomitopsis_20pinicola_20[genbank_20GCA_5F001931775.1_202017-01-04] 2,178 sequences; 45,982,938 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq1 154 2e-31 seq1494 111 2e-18 seq1312 87.8 2e-11 >seq1 Length=925270 Score = 154 bits (170), Expect = 2e-31 Identities = 208/285 (73%), Gaps = 5/285 (2%) Strand=Plus/Minus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 || ||||| || ||||||| ||||| || | |||||| |||||||| || |||||| Sbjct 580717 CCCTCGTCACGGCTGATCAGCTCGTTAGAGAACGTGAGGCCAGGCATGAGACCACGCTTC 580658 Query 869240 TTGAGCCAAAAGATGG-CGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 |||||||| ||||| | |||| || ||| ||||| ||||| ||||||||||| || || Sbjct 580657 TTGAGCCAGAAGATCGACGCA-AAGGAGCCAGAGAAGAAGATACCCTCGACGGCAGCGAA 580599 Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCA 869358 ||| ||| |||||||| ||| |||| | ||| | |||||| | ||||| Sbjct 580598 AGCGACGAGACGCTCGGCGAAG--CTCGA-CCGCTCGTCTGCGATCCAGCGGAGGGCCCA 580542 Query 869359 GTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTTTC 869418 ||| ||||| || | | | || | ||||||||||| |||||||| || | Sbjct 580541 GTCCGCCTTCTTTTTGATGCAAGGGATGGTGTCGATGGCATCGAAGAGGTGCTCGCGCTG 580482 Query 869419 GGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTC 869463 ||||||||||| ||||||||||| ||||||||||| ||||| Sbjct 580481 CTTCGGGTCCTTGATGTAGGTGTCGATGAGGAGCGAATACGTCTC 580437 Score = 138 bits (152), Expect = 1e-26 Identities = 147/194 (76%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 868690 CGCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGAT 868749 |||||||||||| || || ||| |||||| |||||||||||||||| ||||||||| Sbjct 577979 CGCCTTGGCGTAGTCTGAAACACGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAGCGAGAT 578038 Query 868750 CAACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGC 868809 || ||||| | |||||| || | | | |||||| || ||| || ||||| | Sbjct 578039 CATGTCCATGAAATCGAACGGATTCGTTGCGTGGTAGTGTTTCTCGTTGCCCAGCGAAAC 578098 Query 868810 GAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGAT 868869 ||||| | ||||||||| || ||||||||||||| |||||| ||||||||||| || Sbjct 578099 CAGCAGCCTGTCGGCGACGAATTCGATGTACTGGCGCATGAGCTGCGCGTTCATGCCAAT 578158 Query 868870 GAGCGCCACCGGCA 868883 ||||| ||||| Sbjct 578159 CAGCGCGCACGGCA 578172 Score = 134 bits (148), Expect = 2e-25 Identities = 203/287 (71%), Gaps = 9/287 (3%) Strand=Plus/Plus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 || |||||||| | |||| ||||| || | || ||||||||||||||||| ||| Sbjct 578347 CCCTCGTCGCGGATAATCAACTCGTTTGAGAATGTCAGTCCGGGCATGAGGCCGCGTTTC 578406 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299 |||||||| || |||||| ||| ||| ||||||||||||||||| |||||||| ||| Sbjct 578407 TTGAGCCAGAATATGGCGGCGAACGAGCCGGAGAAAAAGATGCCCTCCACGGCGGCGAAG 578466 Query 869300 CCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGT---TGATCCACTTCATCGCC 869356 | | || ||||| || || |||| | ||||| |||||| | ||| Sbjct 578467 GCCACCAGTCGCTCAGCGAA--ACTCGA----CCGCTTGTCTGCGATCCAGCGGAGAGCC 578520 Query 869357 CAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTT 869416 ||||| ||||| ||| | | | || | | ||||||||| ||| || |||| | Sbjct 578521 CAGTCCGCCTTCTTCTTGATGCATGGTATTGCCTCGATGGCGTCAAATAGACGGTCGCGT 578580 Query 869417 TCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTC 869463 || ||||||||||| || || ||||| |||||||| || || || Sbjct 578581 TCTTGCGGGTCCTTGATGTATGTATCGATTAGGAGCGAGTATGTTTC 578627 Score = 125 bits (138), Expect = 9e-23 Identities = 126/164 (77%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 868709 ACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAAC 868768 |||||| |||||| |||||||||||||||| ||||||||||| ||||| | ||| Sbjct 581067 ACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAGCGAGATCATGTCCATGAAGTCGAAG 581008 Query 868769 GGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCGGTCGGCGACA 868828 ||||| | | ||||| ||| || ||||||| | || || ||||| ||||| Sbjct 581007 GGGTTCGTCACGTTGTACACCTTCGAGCCGCCGAGCGCGACAAGGAGCCGGTCAGCGACG 580948 Query 868829 AACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATGAG 868872 || |||||||||||||||||||| ||||||||||||||||| Sbjct 580947 AATTCGATGTACTGGCACATGAGCGTCGCGTTCATGCCGATGAG 580904 Score = 118 bits (130), Expect = 1e-20 Identities = 177/251 (71%), Gaps = 3/251 (1%) Strand=Plus/Minus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 |||||||||||||| || ||||||||||||||| ||| | |||| || | || Sbjct 580435 GAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGTGCCTCAGCAGCCTGC 580376 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 ||||| || ||| || || | ||||| ||| || || ||||| ||| |||||| Sbjct 580375 ACCTCGTTGGAGAAACGTTCGACAAGGTTTTCGTTGACAATACCGTCAGAGGCAGCGAAA 580316 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGA---GCGACACCCAGTGG 869809 || || ||||||||| ||| ||||| ||||||| |||| | | | ||||| | Sbjct 580315 AAGGCGAGGACGTGCGAGATGAAGTGACGCTCGTTGTCGTTCATACGGTTGTTCCAGTCG 580256 Query 869810 ACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTG 869869 | ||| ||||| | ||||||| | ||||||| |||||||| ||||| ||| Sbjct 580255 TGGAGGTCCTTCGACAGGTCGATCTCCTCGACAGTCCAGAAAGAGGCCTCAGCCTTCTTG 580196 Query 869870 TACATCTCCCA 869880 ||||||| ||| Sbjct 580195 TACATCTGCCA 580185 Score = 98.7 bits (108), Expect = 1e-14 Identities = 180/259 (69%), Gaps = 15/259 (6%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 || || |||||||| || ||| ||||||||||| || || | || || | || Sbjct 578629 GAATGTATGTTCTCCATCATGATTTGGAAGCCGTAGAAACACCGTGCTTCCGCAGCCTGC 578688 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 ||||| ||| ||| || | | ||||||||| ||| ||||| ||| || ||||| Sbjct 578689 ACCTCGTTCGAGAAGCGCTCTACGAGGTTCTCGTTCACTATGCCATCGGATGCAGCGAAG 578748 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGA-GCGA------CA--CC 869803 || || |||||||| ||| || || |||||||||||| ||| |||| || || Sbjct 578749 AAGGCGAGGACGTGTGAGATGAAATGTCGCTCGTCGTCGTTGAGGCGATGGTTCCAGTCC 578808 Query 869804 CAGTGGACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCC 869863 |||||| | ||| || | || || | ||| || || ||||||| |||||||| || Sbjct 578809 CAGTGGTC-GTG-CGAC----AGATCTATCTCTTCTGCTGTCCAGAAAGAGGCCTCCGCT 578862 Query 869864 TTTTTGTACATCTCCCATA 869882 | |||||||| ||||| Sbjct 578863 TGCTTGTACATGCGCCATA 578881 >seq1494 Length=22227 Score = 111 bits (122), Expect = 2e-18 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 1627868 CGTCGGCGAGGCCCTGCACGCCGACGCCCATCGGCCGGTGGCGCAGGTTCGAGTGGCGGG 1627927 |||||||||| |||||||| |||| ||| ||||| |||||||||| ||| || | ||| | Sbjct 18969 CGTCGGCGAGACCCTGCACACCGATGCCGATCGGGCGGTGGCGCATGTTGGACTTGCGAG 18910 Query 1627928 CCTCGGGCACCGGGTAGTGGTTGATGTCGATCACGCGGTTGAGGTTGCCCACCACGACCT 1627987 |||| || | |||||| ||| | |||||| | ||||||||||||| | ||||||| Sbjct 18909 CCTCAGGGATGGGGTAGAAGTTCACGTCGATGATGCGGTTGAGGTTGAAGGCAACGACCT 18850 Query 1627988 GGACGATCTCGTGCAG 1628003 ||| |||||||| Sbjct 18849 TTGTGATATCGTGCAG 18834 Score = 96.9 bits (106), Expect = 4e-14 Identities = 173/247 (70%), Gaps = 12/247 (5%) Strand=Plus/Minus Query 1626981 CTGGTCGACGGTAAACTGGATGGCGTCGGCGGCGGGCCTGGTGCGCAGATAGTACATGCC 1627040 |||||||||||| ||||||||||| | || ||||| | |||||||| |||||||| || Sbjct 19757 CTGGTCGACGGTGAACTGGATGGCCTGCGCTGCGGGGCGCGTGCGCAGGTAGTACATCCC 19698 Query 1627041 GGTCTTGAGGCCGCGGCGCCACGCGTAGGCGTGCATCGACGTGATGCGCTCGGGCGTCG- 1627099 ||||| | || ||| ||||| |||||| ||| | ||| || |||| Sbjct 19697 CGTCTTCAACCCCTTCTTCCAGCCGTAGAAGTGCATGCTCGTCA---GCTGGGCGGTCGT 19641 Query 1627100 CGTCGGC-GCA-GTACAGGTTGAGCGACTGGCTCTGGTCGACATAGGGCGCGCGATCGGC 1627157 || || | ||| || || |||||| ||| |||||||| | | | |||| ||||| Sbjct 19640 CGGCGACTGCAGGTGCACGTTGAGGCTCTGACTCTGGTCAATGAACGCGCCGCGGTCGGC 19581 Query 1627158 CGCCATGTCG---ATGGTGACCCGGTTGGGCACCTCCCACACGGTCTTGAAGATGGCCTT 1627214 ||||||||| || | | || || | |||||| || |||||| |||| ||||| Sbjct 19580 AGCCATGTCGAGAATCTTCTTCTGGCTG---ATCTCCCAAACCGTCTTGTAGATCGCCTT 19524 Query 1627215 GAGGTCG 1627221 || |||| Sbjct 19523 GACGTCG 19517 >seq1312 Length=50105 Score = 87.8 bits (96), Expect = 2e-11 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 1254438 GCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACCGACATCGAC 1254497 ||||||||| | ||||| |||| |||||||| || || ||||||| | | ||||| | Sbjct 22327 GCCTCGGTGGCAATGCGCTCGAATATGTCGTTTACGAAGGAGTTCAATATGGCCATCGCC 22268 Query 1254498 TTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1254538 ||||| || ||||| |||||||||||||||||| || || Sbjct 22267 TTGTTAGAAATGCCAGTGTCGGGGTGCACCTGCTTAAGAAC 22227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106960463120426