Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fomitopsis_20pinicola_20[genbank_20GCA_5F001931775.1_202017-01-04] 2,178 sequences; 45,982,938 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq1836 123 2e-23 seq1494 114 1e-20 seq117 100 3e-16 >seq1836 Length=575610 Score = 123 bits (136), Expect = 2e-23 Identities = 154/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| |||| || || || || || || || ||||||||||| || | | Sbjct 192123 GATGCAGATCTTCGTTAAGACTCTCACGGGCAAGACGATCACGCTCGAAGTCGAGTCGTC 192064 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| | || | || || |||||||| ||||| || || || |||||||| || Sbjct 192063 CGACACGATTGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCTCCCGACCA 192004 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || || |||||||| || || || ||||| |||||| | | | |||| ||||| || Sbjct 192003 GCAGCGCTTGATCTTCGCGGGCAAGCAGCTCGAGGATGGCCGCACCCTGTCCGATTACAA 191944 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTG 24913 ||| || ||||| || || || ||| | ||| Sbjct 191943 CATCCAGAAGGAGTCCACCCTTCACCTTGTG 191913 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | || ||||| || || || || || ||||| || || || || || Sbjct 191611 ATGCAAATATTCGTCAAGACGCTCACGGGAAAGACCATAACGCTGGAGGTTGAGTCCTCC 191552 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || ||||||||| || || || || || ||||||||||| Sbjct 191551 GATACCATCGACAACGTCAAGGCAAAGATCCAGGATAAGGAGGGCATCCCTCCCGATCAG 191492 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || | ||||| |||||||||||| |||| || | | |||| || || || Sbjct 191491 CAGCGCCTCATCTTCGCCGGGAAACAGTTGGAAGACGGCCGGACGCTGTCCGACTACAAT 191432 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| ||||| ||||| || ||| | || | || |||||||| || Sbjct 191431 ATTCAGAAGGAGTCGACCCTCCACCTTGTCCTCCGGTTGCGCGGTGG 191385 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || ||||| ||||| || || || ||| | || || || | | Sbjct 191383 ATGCAGATCTTCGTGAAGACGCTTACCGGGAAGACCATCACGTTGGAGGTCGAGTCTTCG 191324 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||||||||| || || || || || ||||| || Sbjct 191323 GACACGATCGACAACGTCAAGGCGAAGATCCAAGATAAGGAGGGTATCCCGCCCGACCAG 191264 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||| | ||||| || ||||| ||||| ||||| | | | || || |||||| Sbjct 191263 CAACGTCTCATCTTCGCTGGGAAGCAGCTTGAGGACGGCCGTACTCTTTCGGACTATAAC 191204 Query 24884 ATTCAAAAGGAATCGACACTACA 24906 || || ||||| ||||| || || Sbjct 191203 ATCCAGAAGGAGTCGACGCTGCA 191181 Score = 93.3 bits (102), Expect = 4e-14 Identities = 148/211 (70%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || || || || || || || || ||||||||||| || | || Sbjct 191894 ATGCAAATCTTCGTCAAGACTCTCACGGGCAAGACGATCACGCTCGAAGTCGAGTCGTCC 191835 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || ||||||||||| Sbjct 191834 GACACGATTGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCTCCCGATCAG 191775 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || |||| ||||| || || ||| |||| || | | |||| || || ||| Sbjct 191774 CAGCGCCTGATTTTTGCGGGCAAGCAGTTGGAAGACGGCCGCACGCTGTCTGACTACAAC 191715 Query 24884 ATTCAAAAGGAATCGACACTACA-CTTGGTG 24913 || || ||||| || || || || || |||| Sbjct 191714 ATCCAGAAGGAGTCAACCCTTCATCTCGGTG 191684 >seq1494 Length=22227 Score = 114 bits (126), Expect = 1e-20 Identities = 292/434 (67%), Gaps = 18/434 (4%) Strand=Plus/Minus Query 138553 GTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATG 138612 ||| ||||||| || | ||||| || |||| |||||| ||| | ||| |||||||| Sbjct 19300 GTGTAAGGCTCGAAGCACTCGTTATTGCCCAAGATCTGACTCGTCGACGCCGTCGGCATA 19241 Query 138613 TACGCCACCAAAAGAGAATTCCGTAAACC-GTGAA-GCTTGATTCGTTCCTTGAGCGACG 138670 ||| || | || || |||| | ||| || || ||| ||||| ||||||| Sbjct 19240 GGCGCAACGAGCAGCGAGTTCCTGAGACCAGTCTTTGCCACCTTC--TCCTTCAGCGACG 19183 Query 138671 ACCAGTCCCACAAATCGCTAGGTTTTTTGTTCCACATATCGTACTGTAACATTCCCAAAC 138730 ||||||||||||||| | ||| | ||||| ||| ||||| | | || Sbjct 19182 CCCAGTCCCACAAATCTGTGGGTGTGACACCCCACAGATCATACTGCAGCTGGCCTTGGG 19123 Query 138731 TTGCGGGACTGCCTTCGTACGAATCGTATACACCA--AACTCTTGCGCCAACTCGTTGCT 138788 | |||||||| ||||||| ||||| ||| ||| ||| | || |||| Sbjct 19122 ACACAGGACTGCCCTCGTACGTCTCGTAAGGGCCATCAACGGCAGCG--ATGTCACTGCT 19065 Query 138789 CGCCTCGAGCGCACCATAGTAAATAGTTTCGGCAATCTGCTGATTGAGCAATCGGGCCT- 138847 |||||||| ||| | | ||| || || || ||||||| || || || || |||| Sbjct 19064 CGCCTCGACCGCGGCGTGGTATATGGTCTCCGCAATCTTCTTGTTTAGGTTACGCGCCTC 19005 Query 138848 CGGCGCTCTCGTACGGCATGCGGAGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCA 138907 ||||| ||| | |||||||| || | |||| |||||||| || || ||||| || | Sbjct 19004 CGGCG-AGTCGAAGGGCATGCGAAGAGCCATGAAGGCGTCGGCGAGACCCTGCACACCGA 18946 Query 138908 CTCCGACAGGGCGATGGCGCAGATTTGACGCTTTTGCG-GCTTC---GATAGGATAATAG 138963 |||| ||||| ||||||| || ||| ||||| || || ||| || || || Sbjct 18945 TGCCGATCGGGCGGTGGCGCATGTTGGAC----TTGCGAGCCTCAGGGATGGGGTAGAAG 18890 Query 138964 TTTACATCGATGAT 138977 || || |||||||| Sbjct 18889 TTCACGTCGATGAT 18876 >seq117 Length=384797 Score = 100 bits (110), Expect = 3e-16 Identities = 149/210 (71%), Gaps = 1/210 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || ||| | ||||| || ||||| || ||||| || || | | Sbjct 361963 ATGCAGATCTTCGTCAAGACGTTGACCGGGAAGACTATCACCCTCGAGGTGGAGTCTTCG 361904 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || ||||| ||||| || || Sbjct 361903 GACACCATCGACAACGTCAAGGCGAAGATCCAGGACAAGGAGGGAATCCCTCCAGACCAG 361844 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || | ||||| || ||||| ||||| || || | | | | |||| || || ||| Sbjct 361843 CAGCGCCTCATCTTCGCTGGGAAGCAGCTCGAAGACGGGCGGACCCTGTCTGACTACAAC 361784 Query 24884 ATTCAAAAGGAATCGACACTACA-CTTGGT 24912 ||||| ||||| ||||| || |||||| Sbjct 361783 ATTCAGAAGGAGAGCACACTGCACCTTGGT 361754 Score = 93.3 bits (102), Expect = 4e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || |||||||| || || || || | | Sbjct 362245 ATGCAGATCTTCGTGAAGACTCTTACGGGCAAGACTATTACCCTTGAGGTTGAGTCTTCT 362186 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||| |||||||| || || || || || || || Sbjct 362185 GACACCATCGACAATGTCAAGGCAAAGATTCAAGACAAGGAGGGTATTCCACCTGACCAG 362126 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT 24859 |||||| |||||||||| || || ||||| |||||| Sbjct 362125 CAACGTCTGATCTTTGCTGGCAAGCAGCTCGAGGAT 362090 Score = 91.5 bits (100), Expect = 1e-13 Identities = 138/193 (72%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || ||||||||||| || || | | Sbjct 362523 ATGCAGATCTTTGTCAAGACCCTCACTGGGAAGACCATTACGCTCGAGGTGGAGTCTTCG 362464 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | ||||| |||||||| || || || || || || || ||||| Sbjct 362463 GACACCATCGACAACGTAAAGGCCAAGATCCAGGATAAGGAGGGTATTCCCCCGGATCAG 362404 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACATGTCAGATTATA 24881 || || | ||||| || || || ||||| |||||| ||| || || | || || || | Sbjct 362403 CAGCGCCTCATCTTCGCTGGTAAGCAGCTTGAGGATGGTCG-GACAC-TCTCCGACTACA 362346 Query 24882 ACATTCAAAAGGA 24894 |||| || ||||| Sbjct 362345 ACATCCAGAAGGA 362333 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449885351537840