Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fomitopsis_20pinicola_20[genbank_20GCA_5F001931775.1_202017-01-04] 2,178 sequences; 45,982,938 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq117 122 7e-23 seq1836 89.7 4e-13 >seq117 Length=384797 Score = 122 bits (134), Expect = 7e-23 Identities = 156/211 (74%), Gaps = 3/211 (1%) Strand=Plus/Plus Query 29578 ACCAA-ATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATC 29636 ||||| ||| || ||| || || || ||||| || || | | |||||| ||| || Sbjct 362036 ACCAAGATGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGACCATCCTC 362095 Query 29637 GAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTG 29696 ||| || ||||||||| | |||| | |||||| || || ||||||||||| |||||||| Sbjct 362096 GAGCTGCTTGCCAGCAAAGATCAGACGTTGCTGGTCAGGTGGAATACCCTCCTTGTCTTG 362155 Query 29697 TAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTT 29755 ||| |||| |||||| | || | ||||||||| || || ||||| || ||||| | Sbjct 362156 -AATCTTTGCCTTGACATTGTCGATGGTGTCAGAAGACTCAACCTCAAGGGTAATAGTCT 362214 Query 29756 TGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||| || | || || || || |||||||| Sbjct 362215 TGCCCGTAAGAGTCTTCACGAAGATCTGCAT 362245 Score = 93.3 bits (102), Expect = 3e-14 Identities = 153/218 (70%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||||||||| | || |||||| || || || ||||||||||||| || || || Sbjct 361470 ACGCAGCACGAGGTGGAGCGTGCTCTCCTTCTGGATGTTATAATCCGAAAGAGTACGGCC 361529 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 || || | || |||||||| | |||| | ||||| || |||||||| ||||| || Sbjct 361530 GTCCTCCAACTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGCGGAATGCCCTCCTT 361589 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 ||| || ||| || | ||||| | || | ||||| || || || || ||||| | Sbjct 361590 GTCCTG-AATCTTCGCCTTGACGTTGTCGATGGTGTCCGACGACTCAACCTCGAGAGTGA 361648 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 | || || || || || || || || || ||||||||| Sbjct 361649 TCGTCTTCCCGGTCAACGTCTTGACGAAGATCTGCATT 361686 >seq1836 Length=575610 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 29583 ATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTG 29642 |||||| ||||| || ||||| ||||| ||||||| || || | || || | || Sbjct 190952 ATGAAGGGTGGACTCCTTTTGGATGTTGTAATCCGAAAGCGTCCTGCCGTCCTCCAACTG 191011 Query 29643 TTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTT 29702 || ||||| | || | | ||||| || || ||||||||||| ||||| || | ||| Sbjct 191012 CTTCCCAGCGAAGATGAGACGCTGCTGGTCTGGGGGAATACCCTCCTTGTCCTGGATTTT 191071 Query 29703 TTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGT 29762 ||||| | || | ||||| || || || |||||||| || || || || || Sbjct 191072 CGCCTTGACGTTGTCAATCGTGTCGGACGACTCGACCTCAAGAGTGATCGTCTTCCCGGT 191131 Query 29763 TAAGGTTTTAACAAATATCTGCAT 29786 || || || ||||| |||||||| Sbjct 191132 CAACGTCTTCACAAAAATCTGCAT 191155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385208974597098