Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fomitopsis_20pinicola_20[genbank_20GCA_5F001931775.1_202017-01-04] 2,178 sequences; 45,982,938 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq1836 102 5e-17 seq117 102 5e-17 >seq1836 Length=575610 Score = 102 bits (112), Expect = 5e-17 Identities = 147/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 33546 ATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTG 33605 ||| || ||| ||| ||||| ||||||||||| || || || | |||| ||||| || Sbjct 190952 ATGAAGGGTGGACTCCTTTTGGATGTTGTAATCCGAAAGCGTCCTGCCGTCCTCCAACTG 191011 Query 33606 TTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTT 33665 || || || || || | ||||||||| ||| | || | ||| || ||||| ||||| Sbjct 191012 CTTCCCAGCGAAGATGAGACGCTGCTGGTCTGGGGGAATACCCTCCTTGTCCTGGATTTT 191071 Query 33666 CTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTG 33724 | | | || | ||| | |||||| || || || |||| |||||||| || || | Sbjct 191072 C-GCCTTGACGTTGTCAATCGTGTCGGACGACTCGACCTCAAGAGTGATCGTCTTCCCGG 191130 Query 33725 TTAACGTTTTTACAAAGATCTGCAT 33749 | ||||| || ||||| |||||||| Sbjct 191131 TCAACGTCTTCACAAAAATCTGCAT 191155 Score = 91.5 bits (100), Expect = 1e-13 Identities = 138/194 (71%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 ||| || || |||||||| || || || ||||| |||| ||||| || || || ||||| Sbjct 191703 CTCCTTCTGGATGTTGTAGTCAGACAGCGTGCGGCCGTCTTCCAACTGCTTGCCCGCAAA 191762 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 ||||| ||||||||||| | || | || || ||||| || ||| ||| || | Sbjct 191763 AATCAGGCGCTGCTGATCGGGAGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTC-ACGT 191821 Query 33678 AGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736 ||| | |||||| || || || || | ||||||||| || || || | || || | Sbjct 191822 TGTCAATCGTGTCGGACGACTCGACTTCGAGCGTGATCGTCTTGCCCGTGAGAGTCTTGA 191881 Query 33737 CAAAGATCTGCATA 33750 | ||||| |||||| Sbjct 191882 CGAAGATTTGCATA 191895 Score = 82.4 bits (90), Expect = 5e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || || ||| ||| || || |||||||||||||| || ||||| | || || | || Sbjct 191920 TGAAGGGTGGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGGCCATCCTCGAGCTGC 191979 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 || || || || ||||| |||||||| || | || | || || ||||| || ||| Sbjct 191980 TTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTC 192039 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 ||| || | ||| | |||||| || || || || | ||||||||| || || || Sbjct 192040 GCCTTC-ACGTTGTCAATCGTGTCGGACGACTCGACTTCGAGCGTGATCGTCTTGCCCGT 192098 Query 33726 TAACGTTTTTACAAAGATCTGCAT 33749 | || || || ||||||||||| Sbjct 192099 GAGAGTCTTAACGAAGATCTGCAT 192122 >seq117 Length=384797 Score = 102 bits (112), Expect = 5e-17 Identities = 152/212 (72%), Gaps = 3/212 (1%) Strand=Plus/Plus Query 33541 ACCAA-ATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 ||||| ||| ||||||||||| || || |||||||| |||||||| ||||| | || || Sbjct 362036 ACCAAGATGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGACCATCCTC 362095 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 | || || || ||||| |||| ||| ||||| || | || | ||| || ||||| Sbjct 362096 GAGCTGCTTGCCAGCAAAGATCAGACGTTGCTGGTCAGGTGGAATACCCTCCTTGTCTTG 362155 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 ||| || || | |||| ||| | |||||| || || || |||| || || || | Sbjct 362156 AATCTT-TGCCTTGACATTGTCGATGGTGTCAGAAGACTCAACCTCAAGGGTAATAGTCT 362214 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || || | || || || |||||||||||| Sbjct 362215 TGCCCGTAAGAGTCTTCACGAAGATCTGCATA 362246 Score = 96.9 bits (106), Expect = 2e-15 Identities = 153/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 33534 ACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTC 33593 ||| | ||| | || || |||||||| || || ||||| ||||| || || || || | Sbjct 361470 ACGCAGCACGAGGTGGAGCGTGCTCTCCTTCTGGATGTTATAATCCGAAAGAGTACGGCC 361529 Query 33594 GTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTT 33653 ||| ||||| || || || || || |||| |||||||| || |||| | || || || Sbjct 361530 GTCCTCCAACTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGCGGAATGCCCTCCTT 361589 Query 33654 GTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGA 33712 ||| ||| ||| || | | | ||| | |||||| || || || || | |||| Sbjct 361590 GTCCTGAATCTTCGCCTTGA-CGTTGTCGATGGTGTCCGACGACTCAACCTCGAGAGTGA 361648 Query 33713 TCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| || || || ||||| || || ||||||||||| Sbjct 361649 TCGTCTTCCCGGTCAACGTCTTGACGAAGATCTGCAT 361685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328695274757760