Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fomitopsis_20pinicola_20[genbank_20GCA_5F001931775.1_202017-01-04] 2,178 sequences; 45,982,938 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq1836 87.8 4e-12 seq117 84.2 5e-11 >seq1836 Length=575610 Score = 87.8 bits (96), Expect = 4e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || ||||| ||| |||||||| ||||| || || || |||| || || || || Sbjct 191608 CAAATATTCGTCAAGACGCTCACGGGAAAGACCATAACGCTGGAGGTTGAGTCCTCCGAT 191549 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| |||||| || || || || || || || || || Sbjct 191548 ACCATCGACAACGTCAAGGCAAAGATCCAGGATAAGGAGGGCATCCCTCCCGATCAGCAG 191489 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||||||||| || ||||||||||| || |||| || |||| ||||| | Sbjct 191488 CGCCTCATCTTCGCCGGGAAACAGTTGGAAGACGGCCGGACGCTGTCCGACTACAATATT 191429 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| || || |||||||| Sbjct 191428 CAGAAGGAGTCGACCCTCCACCTTGT 191403 Score = 84.2 bits (92), Expect = 5e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||| || || |||||||| | ||||| || || ||||| | || Sbjct 192107 AAGACTCTCACGGGCAAGACGATCACGCTCGAAGTCGAGTCGTCCGACACGATTGACAAC 192048 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || || || || ||| || | | |||||| Sbjct 192047 GTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCTCCCGACCAGCAGCGCTTGATCTTC 191988 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||| | || ||||| | || || ||||||||||| ||||||| ||||| Sbjct 191987 GCGGGCAAGCAGCTCGAGGATGGCCGCACCCTGTCCGATTACAACATCCAGAAGGAGTCC 191928 Query 206365 ACTCTTCACCTTGT 206378 || ||||||||||| Sbjct 191927 ACCCTTCACCTTGT 191914 >seq117 Length=384797 Score = 84.2 bits (92), Expect = 5e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| ||| | || || || ||||||||| | || || || || ||| Sbjct 361682 CAGATCTTCGTCAAGACGTTGACCGGGAAGACGATCACTCTCGAGGTTGAGTCGTCGGAC 361623 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| |||||||| || || || || ||| ||| ||| || Sbjct 361622 ACCATCGACAACGTCAAGGCGAAGATTCAGGACAAGGAGGGCATTCCGCCTGACCAGCAG 361563 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || |||||||| || ||||||||||| || || | ||| | | ||||| ||| || Sbjct 361562 CGCCTGATCTTCGCTGGCAAGCAGTTGGAGGACGGCCGTACTCTTTCGGATTATAACATC 361503 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||| || || ||||| || Sbjct 361502 CAGAAGGAGAGCACGCTCCACCTCGT 361477 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181787820551938