Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fomitopsis_20pinicola_20[genbank_20GCA_5F001931775.1_202017-01-04] 2,178 sequences; 45,982,938 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq1 237 2e-56 seq1494 87.8 3e-11 >seq1 Length=925270 Score = 237 bits (262), Expect = 2e-56 Identities = 372/519 (72%), Gaps = 30/519 (6%) Strand=Plus/Minus Query 1455772 GCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCG 1455831 || ||||||| |||||| | ||| | |||||||| || ||||| || || ||| | | Sbjct 578886 GCAGATATGGCGCATGTACAAGCAAG-CGGAGGCCTCTTTCTGGACAGCAGAAGAGATAG 578828 Query 1455832 ACCTCGGCGCCGACACGGTCCACTGGG--TG------TCGC-TGAGCGACGACGAGCGCC 1455882 | || | || |||| |||||||| || |||| | | |||||||||||| | Sbjct 578827 ATCT----GTCG-CACGA-CCACTGGGACTGGAACCATCGCCTCAACGACGACGAGCGAC 578774 Query 1455883 ATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAAC 1455942 |||||||| |||||||||||||| || ||| || ||||||||| ||| ||||||| Sbjct 578773 ATTTCATCTCACACGTCCTCGCCTTCTT-CGCTGCATCCGATGGCATAGTGAACGAGAAC 578715 Query 1455943 CTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTC 1456002 || | | ||||| ||| ||||| || | || ||||| | || ||||| ||| Sbjct 578714 CTCGTAGAGCGCTTCTCGAACGAGGTGCAGGCTGCGGAAGCACGGTGTTTCTACGGCTTC 578655 Query 1456003 CAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTC 1456062 || ||| || || ||||| || || ||||| ||||||||||| ||||| || ||| || Sbjct 578654 CAAATCATGATGGAGAACATACATTCCGAAACATACTCGCTCCTAATCGATACATACATC 578595 Query 1456063 AAGGACCCGGTCGAGAA--GGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGA 1456120 ||||||||| | |||| |||| || ||| ||||||||| | | || | | | Sbjct 578594 AAGGACCCG--CAAGAACGCGACCGTCTATTTGACGCCATCGAGGCAATACCATGCATCA 578537 Query 1456121 GGAAAAAGGCCGACTGGGCGATGAAGTGGATC---AACAAGGAGGGCCTCGACACTTTGC 1456177 ||| ||||| |||||||| | |||||| ||||| | |||| || || Sbjct 578536 AGAAGAAGGCGGACTGGGCTCTCCGCTGGATCGCAGACAAGCGG----TCGA-GTTTCGC 578482 Query 1456178 CGAGCGGCTCGTCGGCTTTGCCG-CGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGC 1456236 ||||| || || | ||| |||| ||| ||||||||||||||||| ||| ||| ||| Sbjct 578481 TGAGCGACTGGTGGCCTTCGCCGCCGTGGAGGGCATCTTTTTCTCCGGCTCGTTCGCCGC 578422 Query 1456237 CATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 ||| || ||||||||||| ||||||||||||||||| || Sbjct 578421 CATATTCTGGCTCAAGAAACGCGGCCTCATGCCCGGACT 578383 Score = 237 bits (262), Expect = 2e-56 Identities = 366/510 (72%), Gaps = 18/510 (4%) Strand=Plus/Plus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| | |||||| || ||||| |||||||| || ||||| | ||||||| |||||| Sbjct 580181 GATCTGGCAGATGTAC-AAGAAGGCTGAGGCCTCTTTCTGGACTGTCGAGGAGATCGACC 580239 Query 1455835 T--CGGCG--CCGACACGGTCCACTGGGTGTCGC---TGAGCGACGACGAGCGCCATTTC 1455887 | || | || |||| ||||| | ||| |||| ||||||| || ||| Sbjct 580240 TGTCGAAGGACCTCCACG----ACTGGAACAACCGTATGAACGACAACGAGCGTCACTTC 580295 Query 1455888 ATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGC 1455947 ||| |||||||||||||||||| ||| ||| || || || || ||| ||||| | Sbjct 580296 ATCTCGCACGTCCTCGCCTTTTT-CGCTGCCTCTGACGGTATTGTCAACGAAAACCTTGT 580354 Query 1455948 CGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGAT 1456007 || || || || ||||| || | |||||||| | || ||||| |||||||| Sbjct 580355 CGAACGTTTCTCCAACGAGGTGCAGGCTGCTGAGGCACGATGCTTCTACGGCTTCCAGAT 580414 Query 1456008 CGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGA 1456067 | || || ||||||||||| || || || |||||||| |||||||||||| ||||||| Sbjct 580415 CATGATGGAGAACATCCACTCCGAGACGTATTCGCTCCTCATCGACACCTACATCAAGGA 580474 Query 1456068 CCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAA 1456127 |||| || || |||||||| ||||||||||| | || | | | || || Sbjct 580475 CCCGAAGCAGCGCGAGCACCTCTTCGATGCCATCGACACCATCCCTTGCATCAAAAAGAA 580534 Query 1456128 GGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTC 1456187 ||| |||||||| | |||||| | ||| | |||| ||| |||||||| ||| Sbjct 580535 GGCGGACTGGGCCCTCCGCTGGATCGCAGACGAGCG-GTCGA-GCTTCGCCGAGCGTCTC 580592 Query 1456188 GTCGGCTTTGCCG-CGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCG-CCATCTTTTG 1456245 |||| || || | ||||||||| ||||| ||||| ||| || |||| | ||||| || Sbjct 580593 GTCGCTTTCGCTGCCGTCGAGGGTATCTTCTTCTCTGGCTCCTT-TGCGTCGATCTTCTG 580651 Query 1456246 GCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 |||||||||||| || |||||||| || || Sbjct 580652 GCTCAAGAAGCGTGGTCTCATGCCTGGCCT 580681 Score = 129 bits (142), Expect = 8e-24 Identities = 153/202 (76%), Gaps = 4/202 (2%) Strand=Plus/Minus Query 1456572 TGCCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGT 1456631 ||||| ||||| || ||||||||||| | ||||||| |||||||||| ||||| || Sbjct 578172 TGCCGTGCGCGCTGATTGGCATGAACGCG-CAGCTCATGCGCCAGTACATCGAATTC-GT 578115 Query 1456632 CGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGT 1456691 ||||||| | ||||| | |||| ||| || |||| ||||||| | | || |||| Sbjct 578114 CGCCGACAGGCTGCTGGTTTCGCTGGGCAACG-AGAAACACTACCACGCAACGAATCCGT 578056 Query 1456692 TCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGTGG 1456751 || | ||||| ||||||||||| |||||||||||||||| |||||| || || Sbjct 578055 TCGATTTCATGGACATGATCTCGCTCCAGGGCAAGACCAACTTCTTCGAGAAGCGTGTTT 577996 Query 1456752 C-GAGTACGCCAAGGCCGGCGT 1456772 | || ||||||||||| || || Sbjct 577995 CAGACTACGCCAAGGCGGGGGT 577974 Score = 129 bits (142), Expect = 8e-24 Identities = 149/195 (76%), Gaps = 8/195 (4%) Strand=Plus/Plus Query 1456583 CTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCC 1456642 ||||||||||||||||| || |||||||||||||||||| ||||| ||||| ||||| | Sbjct 580904 CTCATCGGCATGAACGCGAC-GCTCATGTGCCAGTACATCGAATTC-GTCGCTGACCGGC 580961 Query 1456643 TGCTCGCGGCGCTCGGCTGC--GGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGA 1456700 | || | ||||||||| || | || | || || |||| ||||| ||| | | Sbjct 580962 TCCTTGTCGCGCTCGGCGGCTCGAAGGTGTACAACGTGACG---AACCCCTTCGACTTCA 581018 Query 1456701 TGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGTGGC-GAGTACG 1456759 |||| ||||||||||| |||||||||||||||| |||||| ||||| | || || | Sbjct 581019 TGGACATGATCTCGCTCCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTATCTGACTATG 581078 Query 1456760 CCAAGGCCGGCGTCA 1456774 ||||| || |||| Sbjct 581079 GGAAGGCGGGTGTCA 581093 >seq1494 Length=22227 Score = 87.8 bits (96), Expect = 3e-11 Identities = 168/241 (70%), Gaps = 10/241 (4%) Strand=Plus/Plus Query 263177 TCAAGGCTCTCTTCAAGACCGTGTGGGAGGTGCCCAACCGGGTGACCATT---GATATGG 263233 ||||||| ||| |||||| || |||||| | || || | || ||| || |||| Sbjct 19522 TCAAGGCGATCTACAAGACGGTTTGGGAGAT---CAGCCAGAAGAAGATTCTCGACATGG 19578 Query 263234 CGGCCGACCGCGCGCCCTATGTCGACCAGAGCCAGTCGCTCAACCTGTACCTCGCCGAC- 263292 | |||||||||| | | | |||||||| ||| |||||| || |||| || | | Sbjct 19579 CTGCCGACCGCGGCGCGTTCATTGACCAGAGTCAGAGCCTCAACGTGCACCT-GCAGTCG 19637 Query 263293 CCGACGGCCGAG-AGCATCACGTCGATGCACGCCTATGCGTGGCGTCGCGGCCTCAAGAC 263351 |||||| ||| ||| | ||| |||||| ||| | ||| || | ||||| Sbjct 19638 CCGACGACCGCCCAGC-TGACGAGCATGCACTTCTACGGCTGGAAGAAGGGGTTGAAGAC 19696 Query 263352 TGGCATGTACTATCTGCGCACCCGGCCCGCTGCCAACGCCATTCAATTCACCGTCGATCA 263411 || |||||||| |||||||| || ||||| || | ||||| || ||||||||||| || Sbjct 19697 GGGGATGTACTACCTGCGCACGCGCCCCGCAGCGCAGGCCATCCAGTTCACCGTCGACCA 19756 Query 263412 G 263412 | Sbjct 19757 G 19757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177601127896836