Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fomitopsis_20pinicola_20[genbank_20GCA_5F001931775.1_202017-01-04] 2,178 sequences; 45,982,938 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1 120 4e-22 >seq1 Length=925270 Score = 120 bits (132), Expect = 4e-22 Identities = 368/563 (65%), Gaps = 12/563 (2%) Strand=Plus/Minus Query 39614 AAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTG 39673 ||||| |||||||| || | |||||| || | || || | |||||||| || ||| Sbjct 580741 AAGCAAGCGAAGTCGGTGTGCATGCCCTCGTCACGGCTGATCAGCTCGTTAGAGAACGTG 580682 Query 39674 AGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAG 39733 || |||||||| ||||||||||| |||||||| || || | ||||| || ||||| ||| Sbjct 580681 AGGCCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATCGACGCAAAGGAGCCAGAGAAG 580622 Query 39734 AAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTG---TATCATTA 39790 ||||| || || || || || || || || || | ||| || | || | || | Sbjct 580621 AAGATACCCTCGACGGCAGCGAAAGCGACGAGACGCTCGGCGAAGCTCGACCGCTCGTCT 580562 Query 39791 TGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCA 39850 ||||| | ||||| || || ||||| || | ||||| || || || || ||| Sbjct 580561 GCGATCCAGCGGAGGGCCCAGTCCGCCTTCTTTTTGATGCAAGGGATGGTGTCGATGGCA 580502 Query 39851 TTAAAGAGATAAT-GTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATA 39909 | ||||| | | | | | || || || | || || || || | || ||| Sbjct 580501 TCGAAGAGGTGCTCGCGCTGCTTC-GGGTCCTTGATGTAGGTGTCGATGAGGAGCGAATA 580443 Query 39910 CATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGT 39969 | | || || |||||||| || ||| ||||| || ||||| || |||| ||| |||| Sbjct 580442 CGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGTGCCTCAGC 580383 Query 39970 AATTTGTACCTC--TGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTA 40027 | || ||||| || | ||| | ||| | | ||||| || || || || ||| Sbjct 580382 AGCCTGCACCTCGTTGGAGAAA--CGTTCGACAAGGTTTTCGTTGACAATACCGTCAGAG 580325 Query 40028 GCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCA---ATTTA 40084 || || ||||| || | || || || || | || | | ||| || Sbjct 580324 GCAGCGAAAAAGGCGAGGACGTGCGAGATGAAGTGACGCTCGTTGTCGTTCATACGGTTG 580265 Query 40085 TTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCT 40144 |||||||| | || || || || | || | || || | ||||| || || ||||| Sbjct 580264 TTCCAGTCGTGGAGGTCCTTCGACAGGTCGATCTCCTCGACAGTCCAGAAAGAGGCCTCA 580205 Query 40145 GCCTTTTTGTACATGTTCCATAT 40167 ||||| |||||||| | ||| || Sbjct 580204 GCCTTCTTGTACATCTGCCAGAT 580182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686890098907920