Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fomitopsis_20pinicola_20[genbank_20GCA_5F001931775.1_202017-01-04] 2,178 sequences; 45,982,938 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq1 131 2e-25 >seq1 Length=925270 Score = 131 bits (144), Expect = 2e-25 Identities = 340/508 (67%), Gaps = 19/508 (4%) Strand=Plus/Minus Query 130034 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 130093 |||||||||||| ||| || || || ||||| || || ||||||||||| |||||| Sbjct 580717 CCCTCGTCACGGCTGATCAGCTCGTTAGAGAACGTGAGGCCAGGCATGAGACCACGCTTC 580658 Query 130094 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 130153 || | |||||| |||| ||| ||||||||||||||||| ||||| || ||||| Sbjct 580657 TTGAGCCAGAAGATCGACGCAAAGGAGCCAGAGAAGAAGATACCCTCGACGGCAGCGAAA 580598 Query 130154 GCAAAGAGACGCTCAGCAAAG---GAGCGGGACTTTGTATCAAACCACTTCATCGCCCAC 130210 || | ||||||||| || ||| || || | || | | ||| | ||||| Sbjct 580597 GCGACGAGACGCTCGGCGAAGCTCGACCGCTCGTCTG---CGATCCAGCGGAGGGCCCAG 580541 Query 130211 TGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCT-TCTTTTC 130269 | |||||| || | ||| || |||| ||| | ||| || || ||||| | || | | | Sbjct 580540 TCCGCCTTCTTTTTGATGCAAGGGATGGTGTCGATGGCATCGAAGAGGTGCTCGCGCTGC 580481 Query 130270 TGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCATGGACCAT-TT 130328 | || || |||||||| | || ||||| ||||| || ||| |||| | | Sbjct 580480 T-TCGGGTCCTTGATGTAGGTGTCGATGAGGAGCGAATACGTCTCGGAGTGGATGTTCTC 580422 Query 130329 CATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTCATCTGCAA 130388 ||| || | ||| | ||||||| | || || || ||| ||||| | || | Sbjct 580421 CATCAT-GATCTGGAAGCCGTAGAAGCATCGTGCCTCAGCAGCCTGCACCTCGT-TGGAG 580364 Query 130389 AATTGTTATTGATA---TTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACGCCAGGA 130445 || || | || | || || ||||| || || || |||| ||||| || |||| Sbjct 580363 AAACGT--TCGACAAGGTTTTCGTTGACAATACCGTCAGAGGCAGCGAAAAAGGCGAGGA 580306 Query 130446 TATACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTCCAGTCGTCAAGATCCT 130502 | | ||||| | | || || ||||||| || | |||||||||| || |||| Sbjct 580305 CGTGCGAGATGAAGTGACGCTCGTTGTCGTTCATACGGTTGTTCCAGTCGTGGAGGTCCT 580246 Query 130503 TCGAGAGATCTACCTCCTCCGCAGTCCA 130530 |||| || || | |||||| ||||||| Sbjct 580245 TCGACAGGTCGATCTCCTCGACAGTCCA 580218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618418363101680