Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fomitopsis_20pinicola_20[genbank_20GCA_5F001931775.1_202017-01-04] 2,178 sequences; 45,982,938 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq117 141 3e-28 seq1836 129 2e-24 >seq117 Length=384797 Score = 141 bits (156), Expect = 3e-28 Identities = 168/227 (74%), Gaps = 2/227 (1%) Strand=Plus/Plus Query 140511 CCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGAT 140570 |||| ||| |||||| ||||||| ||||| ||| || || || || || || || Sbjct 362021 CCACGACGGTATCTTAC--CAAGATGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGAG 362078 Query 140571 AATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGA 140630 | || || ||||| || || || || ||||||||||| ||||||||||| ||||| ||| Sbjct 362079 AGCGTGCGACCATCCTCGAGCTGCTTGCCAGCAAAGATCAGACGTTGCTGGTCAGGTGGA 362138 Query 140631 ATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACT 140690 || || || || || ||||| || || || ||||| || || | ||||| | ||||| Sbjct 362139 ATACCCTCCTTGTCTTGAATCTTTGCCTTGACATTGTCGATGGTGTCAGAAGACTCAACC 362198 Query 140691 TCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| |||| ||||| || || || || || || || |||||||| Sbjct 362199 TCAAGGGTAATAGTCTTGCCCGTAAGAGTCTTCACGAAGATCTGCAT 362245 >seq1836 Length=575610 Score = 129 bits (142), Expect = 2e-24 Identities = 152/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 140532 AGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGT 140591 |||||||| || ||||| ||||| || || ||||| || | || | || || || | Sbjct 190950 AGATGAAGGGTGGACTCCTTTTGGATGTTGTAATCCGAAAGCGTCCTGCCGTCCTCCAAC 191009 Query 140592 TGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATT 140651 || || ||||| ||||| ||||| ||||| || || ||||| || || || ||||| ||| Sbjct 191010 TGCTTCCCAGCGAAGATGAGACGCTGCTGGTCTGGGGGAATACCCTCCTTGTCCTGGATT 191069 Query 140652 TTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCG 140711 || || || || || ||||||| || || | || || ||||| || | ||||| ||| Sbjct 191070 TTCGCCTTGACGTTGTCAATCGTGTCGGACGACTCGACCTCAAGAGTGATCGTCTTCCCG 191129 Query 140712 GTTAGTGTTTTTACAAAAATCTGCAT 140737 || | || || |||||||||||||| Sbjct 191130 GTCAACGTCTTCACAAAAATCTGCAT 191155 Score = 114 bits (126), Expect = 4e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||| || ||||| | | || || ||||| || || ||||| || || || ||||| || Sbjct 191153 CATGCCTCCACGAAGACGGAGGACGAGATGCAGCGTCGACTCCTTCTGGATGTTATAGTC 191212 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || || || ||||| || || ||||| ||||| ||||||||||| || || Sbjct 191213 CGAAAGAGTACGGCCGTCCTCAAGCTGCTTCCCAGCGAAGATGAGACGTTGCTGGTCGGG 191272 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || ||||| || || || || || || || || |||| || || | || Sbjct 191273 CGGGATACCCTCCTTATCTTGGATCTTCGCCTTGACGTTGTCGATCGTGTCCGAAGACTC 191332 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || | || | ||||| ||||| || || || || || |||||||| Sbjct 191333 GACCTCCAACGTGATGGTCTTCCCGGTAAGCGTCTTCACGAAGATCTGCAT 191383 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515212115878934