Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fomitopsis_20pinicola_20[genbank_20GCA_5F001931775.1_202017-01-04] 2,178 sequences; 45,982,938 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq1 149 7e-31 seq1494 98.7 1e-15 seq1588 91.5 2e-13 >seq1 Length=925270 Score = 149 bits (164), Expect = 7e-31 Identities = 346/511 (68%), Gaps = 18/511 (4%) Strand=Plus/Minus Query 74768 GCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTT 74827 ||| || || | ||| |||| || || || |||| ||||||||||| || |||||||| Sbjct 580718 GCCCTCGTCACGGCTGATCAGCTCGTTAGAGAACGTGAGGCCAGGCATGAGACCACGCTT 580659 Query 74828 CTTCAACCAAAAGAT-GGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAA 74886 ||| | ||| ||||| | | || ||||| ||| ||||||||| || ||||| || | Sbjct 580658 CTTGAGCCAGAAGATCGACGCA-AAGGAGCCAGAGAAGAAGATACCCTCGACGGCAGCGA 580600 Query 74887 AGGCGACAAGGCGTTGCGCGAACGGTGCATCGGAAGTC----ATCCAAGTCTGAGCCCAT 74942 | ||||| || || | ||||| | | | || ||| ||||| | ||||| Sbjct 580599 AAGCGACGAGACGCTCGGCGAA-GCTCGACCGCTCGTCTGCGATCCAGCGGAGGGCCCAG 580541 Query 74943 TCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCTTGGAAGAG--GCTTGCCTTCT 75000 || || || ||||| ||||| || ||||| || | |||||| ||| || | Sbjct 580540 TCCGCCTTCTTTTTGATGCAAGGGATGGTGTCGATGGCATCGAAGAGGTGCTCGCGCT-G 580482 Query 75001 CTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAATCGACT 75060 ||||||| ||||||| | |||| || | || || |||||||| || || || || Sbjct 580481 CTTCGGG-TCCTTGATGTAGGTGTCGATGAGGAGCGAATACGTCTCGGAGTGGATGTTCT 580423 Query 75061 CGTTGAACGACTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACATCCTTTGAAA 75120 | | | |||| | ||||||| | || ||||| ||| ||| || || || || | Sbjct 580422 CCATCATGATCTGGAAGCCGTAGAAGCATCGTGCCTCAGCAGCCTGCACCTCGTTGGAGA 580363 Query 75121 AA--TTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTAC 75178 || ||| | | | || || |||| || ||||| ||||| |||||||| || || || Sbjct 580362 AACGTTC--GACAAGGTTTTCGTTGACAATACCGTCAGAGGCAGCGAAAAAGGCGAGGAC 580305 Query 75179 CATTTTGATAAAGTGGCGCTCATCGTCAGTGA---GTTTGTCCCAATCCTTCAGGTCCCC 75235 ||| ||||| ||||| | ||| | | | |||| ||| || | |||||| Sbjct 580304 GTGCGAGATGAAGTGACGCTCGTTGTCGTTCATACGGTTGTTCCAGTCGTGGAGGTCCTT 580245 Query 75236 CGCCAAATCAATCTCCTCGACCGTCCAGaaa 75266 || || || ||||||||||| ||||||||| Sbjct 580244 CGACAGGTCGATCTCCTCGACAGTCCAGAAA 580214 >seq1494 Length=22227 Score = 98.7 bits (108), Expect = 1e-15 Identities = 107/141 (76%), Gaps = 6/141 (4%) Strand=Plus/Plus Query 55139 AACCTGAACCGGGTCATCGACAAGAATTACTACCCGA---CTGAAGCGGCGCGCAAGTCC 55195 ||||| ||||| |||||||| ||| | |||||| | |||| ||| ||||||||| Sbjct 18864 AACCTCAACCGCATCATCGACGTGAACTTCTACCCCATCCCTGA---GGCTCGCAAGTCC 18920 Query 55196 AACCTCCGGCACCGGCCCATCGCCATCGGTGTACAGGGCTTGGCCGACATCTTCATGATG 55255 ||| | || ||||| || |||| ||||||||| ||||| | |||||| ||||||| Sbjct 18921 AACATGCGCCACCGCCCGATCGGCATCGGTGTGCAGGGTCTCGCCGACGCCTTCATGGCT 18980 Query 55256 CTCGGATTGCCCTTCGACTCG 55276 || | |||||||||||||| Sbjct 18981 CTTCGCATGCCCTTCGACTCG 19001 Score = 93.3 bits (102), Expect = 5e-14 Identities = 118/161 (73%), Gaps = 6/161 (4%) Strand=Plus/Plus Query 53270 TACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATG--- 53326 ||||| || || || ||||||| |||||||||||||||| || || ||| || Sbjct 17884 TACTTCACACATGCGTCGCCAACGTTGTTCAACGCTGGTACACCACATCCGCAGCTGAGC 17943 Query 53327 TCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTC 53386 ||| |||||||| || |||||||| ||||| ||||| || |||||||| |||||| Sbjct 17944 TCG---TGCTTCCTCGTCTGTATGAAGGACGACTCCATCGAGGGTATCTACGACACGCTC 18000 Query 53387 AAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGG 53427 ||| |||||| ||| |||| |||||||||| || Sbjct 18001 AAGAGCTGTGCCATGATCAGCAAGACCGCGGGTGGTATAGG 18041 Score = 82.4 bits (90), Expect = 8e-11 Identities = 153/225 (68%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 53470 GGGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGC 53529 ||| |||||||| | | | || || ||||||||||| || | | || || || Sbjct 18132 GGGTACGAACGGTTACTCAAACGGTATTGTGCCTATGCTGCGTGCATATGACGCGACTGC 18191 Query 53530 CCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCC 53589 ||| ||||| |||| |||||| ||||| || | ||||| |||||||||||||| Sbjct 18192 CCGATACGTTGACCAAGGTGGTAACAAGCGACCCGGCGCTTTCGCTATCTACCTCGAGCC 18251 Query 53590 GTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGAT 53649 ||||| | ||| | | ||||| ||||| || || |||||| || | || || | Sbjct 18252 CTGGCATGACGATGTCTTCGAGTTCCTCGATCTCCGAAAGAATCATGGCAAAGAGGAAGT 18311 Query 53650 GCGCTGCCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTT 53694 || ||| ||||| || || || ||||| || || ||||| Sbjct 18312 CCGTGCCCGCGACCTCTTCTATGCACTCTGGATCCCCGATCTCTT 18356 >seq1588 Length=127202 Score = 91.5 bits (100), Expect = 2e-13 Identities = 130/183 (71%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 124712 CTCGTGGTTGAACAGAATGCCAGTACACGCAAACATCCCGTACGACTCGCGGTAGTTTTT 124771 |||||||||||| || || || | ||||| |||| ||||||| |||||||||||| || Sbjct 97746 CTCGTGGTTGAAGAGGATCCCGTTGCACGCGTACATGCCGTACGCCTCGCGGTAGTTCTT 97687 Query 124772 CGTCATCCAATACCCAAAGAGCTTGGACACGCCATAGGGGCTTCGGGGGTAGAATGGGGT 124831 ||| ||||| || | | ||||| | || || || ||||| || |||||||| || || Sbjct 97686 CGTGATCCAGAACGCGTACAGCTTCGCGACCCCGTACGGGCTCCGCGGGTAGAACGGCGT 97627 Query 124832 GTTTTCATTTTGGGTAGGTTGCTGAATCTTCCCAAACATCTCCGAAGTACCCGCCTGATA 124891 | || | || | | | | | ||| || ||| |||||| || |||||| || Sbjct 97626 CGTCTCGCTCTGCGGCGTCTCCACGACCTTGCCGTACAGCTCCGACGTCGACGCCTGGTA 97567 Query 124892 GAA 124894 ||| Sbjct 97566 GAA 97564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547201102044400