Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fomitopsis_20pinicola_20[genbank_20GCA_5F001931775.1_202017-01-04] 2,178 sequences; 45,982,938 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq117 187 3e-42 seq1836 159 4e-34 seq1494 156 5e-33 seq1588 141 1e-28 seq1 89.7 6e-13 >seq117 Length=384797 Score = 187 bits (206), Expect = 3e-42 Identities = 165/206 (80%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| ||||| |||||||||||||| |||||||||||||| | Sbjct 362245 ATGCAGATCTTCGTGAAGACTCTTACGGGCAAGACTATTACCCTTGAGGTTGAGTCTTCT 362186 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | ||||| || ||||| ||||||||||| ||||| || |||||| Sbjct 362185 GACACCATCGACAATGTCAAGGCAAAGATTCAAGACAAGGAGGGTATTCCACCTGACCAG 362126 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| || |||||||| ||||| |||||||||| ||| || || | ||||| || Sbjct 362125 CAACGTCTGATCTTTGCTGGCAAGCAGCTCGAGGATGGTCGCACGCTCTCCGACTACAAC 362066 Query 27586 GTCCAAAAGGAATCCACTCTTCATCT 27611 |||| ||||| |||||| ||||| Sbjct 362065 ATCCAGAAGGAGAGCACTCTCCATCT 362040 Score = 159 bits (176), Expect = 4e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| ||||||||| | ||||| ||||| || ||||| ||||||||||| Sbjct 361686 AATGCAGATCTTCGTCAAGACGTTGACCGGGAAGACGATCACTCTCGAGGTTGAGTCGTC 361627 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | ||| | || | ||||| || ||||||||||||||||| ||||| || ||||| Sbjct 361626 GGACACCATCGACAACGTCAAGGCGAAGATTCAGGACAAGGAGGGCATTCCGCCTGACCA 361567 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||||| || || || ||||| ||||| | ||||| | ||||| || | || ||||| Sbjct 361566 GCAGCGCCTGATCTTCGCTGGCAAGCAGTTGGAGGACGGCCGTACTCTTTCGGATTATAA 361507 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||| || || || || ||||||| || || || Sbjct 361506 CATCCAGAAGGAGAGCACGCTCCACCTCGTGCTGCGTCTCCGTGGCGG 361459 Score = 147 bits (162), Expect = 2e-30 Identities = 147/191 (77%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| ||||||||| | ||||| |||||||| || || ||||| ||||| Sbjct 361963 ATGCAGATCTTCGTCAAGACGTTGACCGGGAAGACTATCACCCTCGAGGTGGAGTCTTCG 361904 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||||| || || ||||||||||||||||| |||||||||||| Sbjct 361903 GACACCATCGACAACGTCAAGGCGAAGATCCAGGACAAGGAGGGAATCCCTCCAGACCAG 361844 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || ||||| ||||| ||||| || | || ||||| | ||||| || Sbjct 361843 CAGCGCCTCATCTTCGCTGGGAAGCAGCTCGAAGACGGGCGGACCCTGTCTGACTACAAC 361784 Query 27586 GTCCAAAAGGA 27596 | || ||||| Sbjct 361783 ATTCAGAAGGA 361773 Score = 147 bits (162), Expect = 2e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| || || || ||||| ||||| || ||||| ||||| Sbjct 362523 ATGCAGATCTTTGTCAAGACCCTCACTGGGAAGACCATTACGCTCGAGGTGGAGTCTTCG 362464 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||||| || || ||||| |||||||| ||||| || || ||| Sbjct 362463 GACACCATCGACAACGTAAAGGCCAAGATCCAGGATAAGGAGGGTATTCCCCCGGATCAG 362404 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || ||||||||||| || ||||||| ||| || || | ||||| || Sbjct 362403 CAGCGCCTCATCTTCGCTGGTAAGCAGCTTGAGGATGGTCGGACACTCTCCGACTACAAC 362344 Query 27586 GTCCAAAAGGAATCCACTCTTCATCT 27611 |||| ||||| ||| ||||| || Sbjct 362343 ATCCAGAAGGAGAGCACGCTTCACCT 362318 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || ||||||||||| || || || ||||| ||||| | Sbjct 362876 ATGCAGATCTTTGTGAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTCT 362817 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 || | ||| | || ||||||| || || ||||| |||||||| Sbjct 362816 GACACCATCGACAACGTGAAGGCCAAGATCCAGGATAAGGAGGG 362773 >seq1836 Length=575610 Score = 159 bits (176), Expect = 4e-34 Identities = 159/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| |||||| | ||||| ||||| || ||||||||||| ||||| Sbjct 191155 ATGCAGATTTTTGTGAAGACGTTGACCGGGAAGACGATCACTCTTGAGGTCGAGTCGTCC 191096 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| || | ||||| ||||| |||||||||||||| ||||| ||||||||| Sbjct 191095 GACACGATTGACAACGTCAAGGCGAAAATCCAGGACAAGGAGGGTATTCCCCCAGACCAG 191036 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || ||||| ||||| | ||||| | | || || | || || || Sbjct 191035 CAGCGTCTCATCTTCGCTGGGAAGCAGTTGGAGGACGGCAGGACGCTTTCGGATTACAAC 190976 Query 27586 GTCCAAAAGGAATCCACTCTTCATCT 27611 |||||||||| ||||| |||||||| Sbjct 190975 ATCCAAAAGGAGTCCACCCTTCATCT 190950 Score = 149 bits (164), Expect = 7e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || |||||||||||||| ||||| || || | ||||| ||||| Sbjct 191383 ATGCAGATCTTCGTGAAGACGCTTACCGGGAAGACCATCACGTTGGAGGTCGAGTCTTCG 191324 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || | ||||| || || || || |||||||| || || || |||||| Sbjct 191323 GACACGATCGACAACGTCAAGGCGAAGATCCAAGATAAGGAGGGTATCCCGCCCGACCAG 191264 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| || || ||||| ||||| || ||||| | ||||| || | |||||||| Sbjct 191263 CAACGTCTCATCTTCGCTGGGAAGCAGCTTGAGGACGGCCGTACTCTTTCGGACTATAAC 191204 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || || ||||| ||| | |||||||| || || Sbjct 191203 ATCCAGAAGGAGTCGACGCTGCATCTCGTCCTCCGTCTTCGTGGAGG 191157 Score = 143 bits (158), Expect = 3e-29 Identities = 163/218 (75%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| || || |||||||| || || || || || ||||| Sbjct 191894 ATGCAAATCTTCGTCAAGACTCTCACGGGCAAGACGATCACGCTCGAAGTCGAGTCGTCC 191835 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| || ||||||| || || |||||||||||||| || ||||| || ||| Sbjct 191834 GACACGATTGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCTCCCGATCAG 191775 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || |||||||| || ||||| | || || | || || || | ||||| || Sbjct 191774 CAGCGCCTGATTTTTGCGGGCAAGCAGTTGGAAGACGGCCGCACGCTGTCTGACTACAAC 191715 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 |||| ||||| || || |||||||| | ||||||| Sbjct 191714 ATCCAGAAGGAGTCAACCCTTCATCTCG--GTGCGTCT 191679 Score = 143 bits (158), Expect = 3e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || || |||||||| || || || || || ||||| Sbjct 192122 ATGCAGATCTTCGTTAAGACTCTCACGGGCAAGACGATCACGCTCGAAGTCGAGTCGTCC 192063 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| || ||||||| || || |||||||||||||| || ||||| |||||| Sbjct 192062 GACACGATTGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCTCCCGACCAG 192003 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| | || || || || ||||| |||||||||| || ||||| | || || || Sbjct 192002 CAGCGCTTGATCTTCGCGGGCAAGCAGCTCGAGGATGGCCGCACCCTGTCCGATTACAAC 191943 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| ||||| || || | || || || || || Sbjct 191942 ATCCAGAAGGAGTCCACCCTTCACCTTGTGCTTCGCCTCCGTGGCGG 191896 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || ||||||||||| || || ||||| || || || ||||||||||| Sbjct 191611 ATGCAAATATTCGTCAAGACGCTCACGGGAAAGACCATAACGCTGGAGGTTGAGTCCTCC 191552 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | || | ||||| || || ||||| |||||||| || ||||| || ||| Sbjct 191551 GATACCATCGACAACGTCAAGGCAAAGATCCAGGATAAGGAGGGCATCCCTCCCGATCAG 191492 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || || || || || | || || | || || || | ||||| ||| Sbjct 191491 CAGCGCCTCATCTTCGCCGGGAAACAGTTGGAAGACGGCCGGACGCTGTCCGACTACAAT 191432 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| || || || || || ||| | || | |||||||| Sbjct 191431 ATTCAGAAGGAGTCGACCCTCCACCTTGTCCTCCGGTTGCGCGGTGG 191385 Score = 95.1 bits (104), Expect = 1e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 27511 ATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACC 27570 || ||||| ||||||||||| || || || ||||| ||||| |||||||||| || || Sbjct 192245 ATCCCTCCCGACCAGCAGCGCCTCATCTTCGCTGGAAAGCAGCTCGAGGATGGCCGCACG 192186 Query 27571 CTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGT 27630 || | ||||| || |||| ||||| ||||| || || || ||| | ||||| || ||| Sbjct 192185 CTCTCGGACTACAACATCCAGAAGGAGTCCACCCTCCACCTCGTCCTCCGTCTCCGTGGT 192126 Query 27631 GG 27632 || Sbjct 192125 GG 192124 >seq1494 Length=22227 Score = 156 bits (172), Expect = 5e-33 Identities = 220/303 (73%), Gaps = 6/303 (2%) Strand=Plus/Minus Query 80715 CATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGA 80774 |||||| |||| || || ||||| || |||||| ||||||||||||||||| |||| || Sbjct 18977 CATGAAGGCGTCGGCGAGACCCTGCACACCGATGCCGATCGGGCGGTGGCGCATGTTGGA 18918 Query 80775 -TCGCTCGGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTG 80833 | || ||||| || || ||||| ||||| ||||||| |||||| |||||| | Sbjct 18917 CTTGC-GAGCCTCAGGGATGGGGTAGAAGTTCACGTCGATGATGCGGTTGAGGTTGAAGG 18859 Query 80834 TAACAACCCGTGTAACATCATGAAGTTTCTGAAAGTCGAATTGGTTCCCCT-TC-ACAAA 80891 ||| ||| ||| | ||| || || ||||| |||| | | | ||| || || | || Sbjct 18858 CAACGACCTTTGTGATATCGTGCAGCTTCTGGAAGTTGTACT--CTCCGCTCTCGATGAA 18801 Query 80892 TGCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTC 80951 || ||| ||| | |||||||| ||||| ||||| ||| || | | | |||| Sbjct 18800 TGACGGGAGGGAGATGGACGCCAAGTTGCAGACGGCGGTCTCATCTGGCGACGAATACTC 18741 Query 80952 GACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTT 81011 || ||| || ||||| | ||| || ||||| || || || ||||| |||||||| ||||| Sbjct 18740 GATGATCTCGGTGCAGAGATTTGACGACTTGATCGTGCCGAGGTTCTTCTGGTTAGACTT 18681 Query 81012 GGC 81014 ||| Sbjct 18680 GGC 18678 Score = 93.3 bits (102), Expect = 5e-14 Identities = 154/222 (69%), Gaps = 9/222 (4%) Strand=Plus/Minus Query 81244 TCAGGGATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTG 81303 || ||||||||||| || ||| ||||||||| || | ||||| | || || || Sbjct 18350 TCGGGGATCCAGAGTGCATAGAAGAGGTCGCGGGCACGGACTTCCTCTTTGCCATGATTC 18291 Query 81304 AGGCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATC 81363 || | ||||| || || | || || ||||||| ||||| || || | |||| Sbjct 18290 TTTCGGAGATCGAGGAACTCGAAGACATCGTCATGCCAGGGCTCGAGGTAGATAGCGAAA 18231 Query 81364 GACCC------CTTGCGACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACA 81417 | || |||| || |||| |||| ||||| ||||||||||||| | || || Sbjct 18230 GCGCCGGGTCGCTTGTTAC---CACCTTGGTCAACGTATCGGGCAGTCGCGTCATATGCA 18174 Query 81418 CGCAACATAGGGATGATACCATCTGACTGACCGTTCGTACCC 81459 |||| |||||| | ||||| | ||| | ||||||||||||| Sbjct 18173 CGCAGCATAGGCACAATACCGTTTGAGTAACCGTTCGTACCC 18132 >seq1588 Length=127202 Score = 141 bits (156), Expect = 1e-28 Identities = 221/321 (69%), Gaps = 0/321 (0%) Strand=Plus/Plus Query 24585 GAGGTCTATAACCTAGGTGCCCAGTCACACGTCAAGCTGTCGTTTGACCAACCCGAGTAC 24644 ||||| || ||||| || || ||||| ||||||||| | ||||| || | |||||| Sbjct 97426 GAGGTGTACAACCTCGGCGCGCAGTCGCACGTCAAGGTCTCGTTCGAGATGGCGGAGTAC 97485 Query 24645 ACGGCCAACGTGGATGCTCTAGGCACCCTAAGAATTCTTGAAGCAATTCGCNNNNNNNNN 24704 |||| | |||| || | || ||||| || | | || || || || || Sbjct 97486 ACGGGCGACGTCGACGGACTGGGCACGCTGCGGCTGCTCGACGCGATCCGGACGTGCGGG 97545 Query 24705 NNNNNNTTGAAATTCAGATTTTATCAGGCGGGTACGAGTGAGATGTTTGGCAAGGTGCAG 24764 | | | | || || |||||| ||| ||| ||| |||||||| | Sbjct 97546 CTCGAGCGGCACGTGCGCTTCTACCAGGCGTCGACGTCGGAGCTGTACGGCAAGGTCGTG 97605 Query 24765 GAGACGCCACAGTCGGAGACCACTCCATTTTATCCGCGAAGCCCGTATGGGGTCTCAAAG 24824 |||||||| ||| ||||| || || || || ||||| |||||||| |||||| | ||| Sbjct 97606 GAGACGCCGCAGAGCGAGACGACGCCGTTCTACCCGCGGAGCCCGTACGGGGTCGCGAAG 97665 Query 24825 GTGTTCGCGTACTGGATAACCAAGAACTACCGTGAGGCCCATGGGATATATGCATGCAAC 24884 ||| ||||| |||||| || ||||||||||| ||||| | || || || || |||||| Sbjct 97666 CTGTACGCGTTCTGGATCACGAAGAACTACCGCGAGGCGTACGGCATGTACGCGTGCAAC 97725 Query 24885 GGAATTCTGTTCAACCATGAG 24905 || || || |||||||| ||| Sbjct 97726 GGGATCCTCTTCAACCACGAG 97746 >seq1 Length=925270 Score = 89.7 bits (98), Expect = 6e-13 Identities = 134/188 (71%), Gaps = 3/188 (2%) Strand=Plus/Plus Query 64663 AAAAAGGCTGAATGGGCCATCCGGTGGATG--AATCGTG-GGTCGTCGTTTGGTCAGCGT 64719 || ||||| || |||||| |||| ||||| | || | ||||| || | ||||| Sbjct 580530 AAGAAGGCGGACTGGGCCCTCCGCTGGATCGCAGACGAGCGGTCGAGCTTCGCCGAGCGT 580589 Query 64720 CTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTC 64779 |||| ||||| || || || || || ||||| ||||| || || || || ||| Sbjct 580590 CTCGTCGCTTTCGCTGCCGTCGAGGGTATCTTCTTCTCTGGCTCCTTTGCGTCGATCTTC 580649 Query 64780 TGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGG 64839 ||||| || ||||| || || ||||| || || |||| || |||||||||||| || Sbjct 580650 TGGCTCAAGAAGCGTGGTCTCATGCCTGGCCTCACGTTCTCTAACGAGCTGATCAGCCGT 580709 Query 64840 GACGAGGG 64847 |||||||| Sbjct 580710 GACGAGGG 580717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570294873299360