Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fomitopsis_20pinicola_20[genbank_20GCA_5F001931775.1_202017-01-04] 2,178 sequences; 45,982,938 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq117 107 1e-18 seq1836 104 1e-17 >seq117 Length=384797 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | ||||||| ||| | ||||| ||||||||||| || ||||||||||| ||| Sbjct 361459 CCGCCACGGAGACGCAGCACGAGGTGGAGCGTGCTCTCCTTCTGGATGTTATAATCCGAA 361518 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || |||| || | || || || || || || | ||||| ||||| ||||| Sbjct 361519 AGAGTACGGCCGTCCTCCAACTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGCGGA 361578 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||| ||| || | || ||| | || ||||| ||| || Sbjct 361579 ATGCCCTCCTTGTC-CTGAATCTTCGCCTTGACGTTGTCGATGGTGTCCGACGACTCAAC 361637 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | || ||||| || ||||| ||||| || || || |||||||| Sbjct 361638 CTCGAGAGTGATCGTCTTCCCGGTCAACGTCTTGACGAAGATCTGCAT 361685 Score = 104 bits (114), Expect = 1e-17 Identities = 147/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 || || ||||||||||| |||||||| || || || || || ||| ||||||| || || Sbjct 361761 TGCAGTGTGCTCTCCTTCTGAATGTTGTAGTCAGACAGGGTCCGCCCGTCTTCGAGCTGC 361820 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623 || || || || || | ||||| ||||| || || | |||||||||||| |||| || Sbjct 361821 TTCCCAGCGAAGATGAGGCGCTGCTGGTCTGGAGGGATTCCCTCCTTGTCCTGGATC-TT 361879 Query 34624 TGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682 | || ||| | || ||||| |||||| || | ||| || || || ||||| Sbjct 361880 CGCCTTGACGTTGTCGATGGTGTCCGAAGACTCCACCTCGAGGGTGATAGTCTTCCCGGT 361939 Query 34683 TAACGTTTTCACAAAAATCTGCAT 34706 ||||| || || || |||||||| Sbjct 361940 CAACGTCTTGACGAAGATCTGCAT 361963 Score = 86.0 bits (94), Expect = 4e-12 Identities = 96/127 (76%), Gaps = 1/127 (1%) Strand=Plus/Plus Query 34498 ACCAA-ATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTC 34556 ||||| |||||||||||||||||| || ||||| || || || || || || | || || Sbjct 362036 ACCAAGATGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGACCATCCTC 362095 Query 34557 AAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGT 34616 || || || || ||||| || | ||| || ||||| || || | |||||||||||| Sbjct 362096 GAGCTGCTTGCCAGCAAAGATCAGACGTTGCTGGTCAGGTGGAATACCCTCCTTGTCTTG 362155 Query 34617 GATCTTT 34623 |||||| Sbjct 362156 AATCTTT 362162 >seq1836 Length=575610 Score = 104 bits (114), Expect = 1e-17 Identities = 148/206 (72%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 34503 ATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTG 34562 ||| || ||| ||||||||| ||||| ||||| ||||| || | |||| || | || Sbjct 190952 ATGAAGGGTGGACTCCTTTTGGATGTTGTAATCCGAAAGCGTCCTGCCGTCCTCCAACTG 191011 Query 34563 TTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTT 34622 || || || || || | |||||| ||||| || || | ||||||||||| ||| || Sbjct 191012 CTTCCCAGCGAAGATGAGACGCTGCTGGTCTGGGGGAATACCCTCCTTGTCCTGGAT-TT 191070 Query 34623 TTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGG 34681 | | || ||| | ||| ||||| ||| || || | || ||||| || |||| Sbjct 191071 TCGCCTTGACGTTGTCAATCGTGTCGGACGACTCGACCTCAAGAGTGATCGTCTTCCCGG 191130 Query 34682 TTAACGTTTTCACAAAAATCTGCATG 34707 | ||||| |||||||||||||||||| Sbjct 191131 TCAACGTCTTCACAAAAATCTGCATG 191156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314721245699474