Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fomitopsis_20pinicola_20[genbank_20GCA_5F001931775.1_202017-01-04] 2,178 sequences; 45,982,938 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq1836 140 3e-28 seq117 104 2e-17 >seq1836 Length=575610 Score = 140 bits (154), Expect = 3e-28 Identities = 154/205 (75%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || || ||||||| ||| | || |||||||| || || |||| Sbjct 191156 CATGCAGATTTTTGTGAAGACGTTGACCGGGAAGACGATCACTCTTGAGGTCGAGTCGTC 191097 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||| ||||||| | ||||| ||||| || ||||| || || || || || || || Sbjct 191096 CGACACGATTGACAACGTCAAGGCGAAAATCCAGGACAAGGAGGGTATTCCCCCAGACCA 191037 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | || | ||| || || || ||||| ||| | ||| |||| |||||||| Sbjct 191036 GCAGCGTCTCATCTTCGCTGGGAAGCAGTTGGAGGACGGCAGGACGCTTTCGGATTACAA 190977 Query 27167 CATTCAAAAGGAGTCGACCTTACAT 27191 ||| ||||||||||| ||| | ||| Sbjct 190976 CATCCAAAAGGAGTCCACCCTTCAT 190952 Score = 123 bits (136), Expect = 2e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| ||||| || || || || || || ||| | || || || || || || | || Sbjct 191612 CATGCAAATATTCGTCAAGACGCTCACGGGAAAGACCATAACGCTGGAGGTTGAGTCCTC 191553 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || || | ||||| ||| || || || || || ||||| || |||||||| Sbjct 191552 CGATACCATCGACAACGTCAAGGCAAAGATCCAGGATAAGGAGGGCATCCCTCCCGATCA 191493 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||| | || | |||||| ||||| ||||||||| | ||| | ||||| ||||| Sbjct 191492 GCAGCGCCTCATCTTCGCCGGGAAACAGTTGGAAGACGGCCGGACGCTGTCCGACTACAA 191433 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| |||||||||||| | || | || | || ||||| ||||| || Sbjct 191432 TATTCAGAAGGAGTCGACCCTCCACCTTGTCCTCCGGTTGCGCGGTGGTAT 191382 Score = 118 bits (130), Expect = 9e-22 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || ||||| || |||||| | || || || ||||| || ||||| Sbjct 192122 ATGCAGATCTTCGTTAAGACTCTCACGGGCAAGACGATCACGCTCGAAGTCGAGTCGTCC 192063 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| ||||||| | || || || || || ||||| || ||||| || ||||| || Sbjct 192062 GACACGATTGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCTCCCGACCAG 192003 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| || || | ||| ||||| || | || || | ||| | |||||||||||| Sbjct 192002 CAGCGCTTGATCTTCGCGGGCAAGCAGCTCGAGGATGGCCGCACCCTGTCCGATTACAAC 191943 Query 27168 ATTCAAAAGGAGTCGACC 27185 || || |||||||| ||| Sbjct 191942 ATCCAGAAGGAGTCCACC 191925 Score = 82.4 bits (90), Expect = 7e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || ||||| ||| | || || | || || || | || Sbjct 191383 ATGCAGATCTTCGTGAAGACGCTTACCGGGAAGACCATCACGTTGGAGGTCGAGTCTTCG 191324 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| || | ||||| || || ||||| || || || || || ||||| || Sbjct 191323 GACACGATCGACAACGTCAAGGCGAAGATCCAAGATAAGGAGGGTATCCCGCCCGACCAG 191264 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | || | ||| || || || | || ||| | || |||| || || ||| Sbjct 191263 CAACGTCTCATCTTCGCTGGGAAGCAGCTTGAGGACGGCCGTACTCTTTCGGACTATAAC 191204 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || ||||||||||| | ||| | || | ||| | || || ||||| Sbjct 191203 ATCCAGAAGGAGTCGACGCTGCATCTCGTCCTCCGTCTTCGTGGAGGCAT 191154 >seq117 Length=384797 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || ||||| || |||||| ||||||| ||||| || || | || Sbjct 362245 ATGCAGATCTTCGTGAAGACTCTTACGGGCAAGACTATTACCCTTGAGGTTGAGTCTTCT 362186 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | ||||| ||| ||||||||||| || || || ||||| || || Sbjct 362185 GACACCATCGACAATGTCAAGGCAAAGATTCAAGACAAGGAGGGTATTCCACCTGACCAG 362126 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | || | || ||||| || | || || || || | ||||| |||||| Sbjct 362125 CAACGTCTGATCTTTGCTGGCAAGCAGCTCGAGGATGGTCGCACGCTCTCCGACTACAAC 362066 Query 27168 ATTCAAAAGGAG 27179 || || |||||| Sbjct 362065 ATCCAGAAGGAG 362054 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||||| ||| |||| || || || ||||| | || Sbjct 361963 ATGCAGATCTTCGTCAAGACGTTGACCGGGAAGACTATCACCCTCGAGGTGGAGTCTTCG 361904 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | ||||| || || || ||||| || || || || || || || Sbjct 361903 GACACCATCGACAACGTCAAGGCGAAGATCCAGGACAAGGAGGGAATCCCTCCAGACCAG 361844 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | ||| || || || | |||||| | |||| | || || |||||| Sbjct 361843 CAGCGCCTCATCTTCGCTGGGAAGCAGCTCGAAGACGGGCGGACCCTGTCTGACTACAAC 361784 Query 27168 ATTCAAAAGGAG 27179 ||||| |||||| Sbjct 361783 ATTCAGAAGGAG 361772 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434906559346560