Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fomitopsis_20pinicola_20[genbank_20GCA_5F001931775.1_202017-01-04] 2,178 sequences; 45,982,938 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq1836 102 7e-17 seq117 95.1 1e-14 >seq1836 Length=575610 Score = 102 bits (112), Expect = 7e-17 Identities = 155/218 (71%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | ||| | || || ||| ||| || || || || ||||||| || || || | Sbjct 191907 GCGAAGCACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGGCC 191966 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 || || ||||| |||||||| || || | ||||||||||||| || | || ||| || Sbjct 191967 ATCCTCGAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGGATGCCCTCCTT 192026 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGA 39247 |||| ||| ||| || | ||| | | | ||| ||| |||||| || || | ||||| Sbjct 192027 GTCCTGGATCTTCGCCTTCA-CGTTGTCAATCGTGTCGGACGACTCGACTTCGAGCGTGA 192085 Query 39248 TACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATC 39285 | | || ||||| || || ||||| ||||| |||||| Sbjct 192086 TCGTCTTGCCCGTGAGAGTCTTAACGAAGATCTGCATC 192123 Score = 96.9 bits (106), Expect = 3e-15 Identities = 146/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 39081 ATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTG 39140 ||| || ||| ||| ||||| || || ||||| | ||| || | |||| || | ||| Sbjct 190952 ATGAAGGGTGGACTCCTTTTGGATGTTGTAATCCGAAAGCGTCCTGCCGTCCTCCAACTG 191011 Query 39141 TTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTT 39200 || || || || || |||||||||||||| | ||| | | ||| |||||| |||||| Sbjct 191012 CTTCCCAGCGAAGATGAGACGCTGCTGGTCTGGGGGAATACCCTCCTTGTCCTGGATTTT 191071 Query 39201 CTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCG 39259 | |||| ||| | | | ||| ||| |||||| || || | ||||| | || || | Sbjct 191072 CGCCTTGA-CGTTGTCAATCGTGTCGGACGACTCGACCTCAAGAGTGATCGTCTTCCCGG 191130 Query 39260 TCAGCGTTTTAACAAAGATTTGCAT 39284 ||| ||| || ||||| || ||||| Sbjct 191131 TCAACGTCTTCACAAAAATCTGCAT 191155 Score = 93.3 bits (102), Expect = 4e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 ||| || || || || || || | || || || |||| || | ||| ||||||||||| Sbjct 191703 CTCCTTCTGGATGTTGTAGTCAGACAGCGTGCGGCCGTCTTCCAACTGCTTGCCCGCAAA 191762 Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212 || || |||||||| |||| || | || ||| |||||| ||| ||| || | ||| Sbjct 191763 AATCAGGCGCTGCTGATCGGGAGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCA-CGT 191821 Query 39213 CG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAA 39271 | | | ||| ||| |||||| || || | |||||| | || ||||| || || || | Sbjct 191822 TGTCAATCGTGTCGGACGACTCGACTTCGAGCGTGATCGTCTTGCCCGTGAGAGTCTTGA 191881 Query 39272 CAAAGATTTGCAT 39284 | ||||||||||| Sbjct 191882 CGAAGATTTGCAT 191894 >seq117 Length=384797 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || ||||||||||| || || || |||||||| | ||| || || |||| || | ||| Sbjct 361483 TGGAGCGTGCTCTCCTTCTGGATGTTATAATCCGAAAGAGTACGGCCGTCCTCCAACTGC 361542 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 ||||| || || || || ||||||||||| | || | || ||| |||||| || ||| Sbjct 361543 TTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGCGGAATGCCCTCCTTGTCCTGAATCTTC 361602 Query 39202 TGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260 |||| ||| | | | || || |||||| || || | ||||| | || || || Sbjct 361603 GCCTTGA-CGTTGTCGATGGTGTCCGACGACTCAACCTCGAGAGTGATCGTCTTCCCGGT 361661 Query 39261 CAGCGTTTTAACAAAGATTTGCAT 39284 || ||| || || ||||| ||||| Sbjct 361662 CAACGTCTTGACGAAGATCTGCAT 361685 Score = 82.4 bits (90), Expect = 7e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || || |||||||| || || || || || || | || || || |||| || ||||| Sbjct 361761 TGCAGTGTGCTCTCCTTCTGAATGTTGTAGTCAGACAGGGTCCGCCCGTCTTCGAGCTGC 361820 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 || || || || || || ||||||||||| | || | | ||| |||||| ||| ||| Sbjct 361821 TTCCCAGCGAAGATGAGGCGCTGCTGGTCTGGAGGGATTCCCTCCTTGTCCTGGATCTTC 361880 Query 39202 TGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260 |||| ||| | | | || || |||||||| || | |||||| | || || || Sbjct 361881 GCCTTGA-CGTTGTCGATGGTGTCCGAAGACTCCACCTCGAGGGTGATAGTCTTCCCGGT 361939 Query 39261 CAGCGTTTTAACAAAGATTTGCAT 39284 || ||| || || ||||| ||||| Sbjct 361940 CAACGTCTTGACGAAGATCTGCAT 361963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429534197980514