Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fomitopsis_20pinicola_20[genbank_20GCA_5F001931775.1_202017-01-04] 2,178 sequences; 45,982,938 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq1836 143 6e-29 seq117 141 2e-28 seq152 123 6e-23 seq343 86.0 1e-11 >seq1836 Length=575610 Score = 143 bits (158), Expect = 6e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || |||||||| || ||||| || || |||| |||||||||| || || | ||||| Sbjct 191911 AGCACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGGCCATCC 191970 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| | || || |||||||| || || || |||||||| Sbjct 191971 TCGAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCC 192030 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| |||||| || || ||||| || | || || || | |||||||||| Sbjct 192031 TGGATCTTCGCCTTCACGTTGTCAATCGTGTCGGACGACTCGACTTCGAGCGTGATCGTC 192090 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||||| | ||| || | ||| | ||||| Sbjct 192091 TTGCCCGTGAGAGTCTTAACGAAGATCTGCAT 192122 Score = 134 bits (148), Expect = 3e-26 Identities = 163/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | ||||| || || || || || || || |||| || || || | | ||| Sbjct 191162 ACGAAGACGGAGGACGAGATGCAGCGTCGACTCCTTCTGGATGTTATAGTCCGAAAGAGT 191221 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || |||||||||||||||||||| || ||||| ||||||||||| ||||| Sbjct 191222 ACGGCCGTCCTCAAGCTGCTTCCCAGCGAAGATGAGACGTTGCTGGTCGGGCGGGATACC 191281 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||| ||||||||||| ||| || ||||| ||||| || | || || || || Sbjct 191282 CTCCTTATCTTGGATCTTCGCCTTGACGTTGTCGATCGTGTCCGAAGACTCGACCTCCAA 191341 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||| ||||| || || | || || | ||| | ||||| Sbjct 191342 CGTGATGGTCTTCCCGGTAAGCGTCTTCACGAAGATCTGCAT 191383 Score = 131 bits (144), Expect = 4e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 |||||||||||||| || || || || || | |||||| |||| || || | || ||| Sbjct 191400 AGGACAAGGTGGAGGGTCGACTCCTTCTGAATATTGTAGTCGGACAGCGTCCGGCCGTCT 191459 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | ||| ||||| |||||||| || || || || ||||| || || || ||||| || Sbjct 191460 TCCAACTGTTTCCCGGCGAAGATGAGGCGCTGCTGATCGGGAGGGATGCCCTCCTTATCC 191519 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 ||||||||| ||| || |||||||| || |||| || || || | ||| || ||| Sbjct 191520 TGGATCTTTGCCTTGACGTTGTCGATGGTATCGGAGGACTCAACCTCCAGCGTTATGGTC 191579 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || ||||| | || || | ||| | |||||| Sbjct 191580 TTTCCCGTGAGCGTCTTGACGAATATTTGCAT 191611 Score = 120 bits (132), Expect = 7e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 225508 AGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGC 225567 || || || ||||| || ||||||| |||||||| | | || || || || || | | Sbjct 190950 AGATGAAGGGTGGACTCCTTTTGGATGTTGTAATCCGAAAGCGTCCTGCCGTCCTCCAAC 191009 Query 225568 TGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATC 225627 ||||||||||||||||| || || || ||||| || |||||||| |||||||| ||||| Sbjct 191010 TGCTTCCCAGCGAAGATGAGACGCTGCTGGTCTGGGGGAATACCCTCCTTGTCCTGGATT 191069 Query 225628 TTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCC 225687 || ||| || || || ||||| || | || || || | ||||||||||| || Sbjct 191070 TTCGCCTTGACGTTGTCAATCGTGTCGGACGACTCGACCTCAAGAGTGATCGTCTTCCCG 191129 Query 225688 GTCAAAGTTTT 225698 ||||| || || Sbjct 191130 GTCAACGTCTT 191140 Score = 111 bits (122), Expect = 4e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 225508 AGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGC 225567 || || || || || || || |||| ||||| || | || || | || ||||| | | Sbjct 191689 AGATGAAGGGTTGACTCCTTCTGGATGTTGTAGTCAGACAGCGTGCGGCCGTCTTCCAAC 191748 Query 225568 TGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATC 225627 ||||| || || || || || || || || ||||| || || || |||||||| |||||| Sbjct 191749 TGCTTGCCCGCAAAAATCAGGCGCTGCTGATCGGGAGGGATGCCCTCCTTGTCCTGGATC 191808 Query 225628 TTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCC 225687 || |||||| || || ||||| || | || || || | |||||||||||||||| Sbjct 191809 TTCGCCTTCACGTTGTCAATCGTGTCGGACGACTCGACTTCGAGCGTGATCGTCTTGCCC 191868 Query 225688 GTCAAAGTTTTTATGAACACTTGCAT 225713 || | ||| || | ||| | |||||| Sbjct 191869 GTGAGAGTCTTGACGAAGATTTGCAT 191894 >seq117 Length=384797 Score = 141 bits (156), Expect = 2e-28 Identities = 156/208 (75%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 225506 CAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTA 225565 |||| ||||||||| || || |||| ||||| |||| | || | ||||| || | Sbjct 362038 CAAGATGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGACCATCCTCGA 362097 Query 225566 GCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGA 225625 ||||||| ||||| ||||| || ||||| ||||| || |||||||| ||||||||||| | Sbjct 362098 GCTGCTTGCCAGCAAAGATCAGACGTTGCTGGTCAGGTGGAATACCCTCCTTGTCTTGAA 362157 Query 225626 TCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGC 225685 ||||| ||| ||| ||||||||||| || | || || || | || || ||||||| Sbjct 362158 TCTTTGCCTTGACATTGTCGATGGTGTCAGAAGACTCAACCTCAAGGGTAATAGTCTTGC 362217 Query 225686 CCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||| | ||| || | ||| | ||||| Sbjct 362218 CCGTAAGAGTCTTCACGAAGATCTGCAT 362245 Score = 127 bits (140), Expect = 5e-24 Identities = 162/223 (73%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||| || |||||||| ||| || || |||| || ||||| | | ||| Sbjct 361464 ACGGAGACGCAGCACGAGGTGGAGCGTGCTCTCCTTCTGGATGTTATAATCCGAAAGAGT 361523 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || | |||||| ||||||||||| || || || ||||| |||||||| || Sbjct 361524 ACGGCCGTCCTCCAACTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGCGGAATGCC 361583 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| || ||||| ||| || ||||||||||| || | || || || | Sbjct 361584 CTCCTTGTCCTGAATCTTCGCCTTGACGTTGTCGATGGTGTCCGACGACTCAACCTCGAG 361643 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 ||||||||||| || ||||| || || | ||| | |||||| Sbjct 361644 AGTGATCGTCTTCCCGGTCAACGTCTTGACGAAGATCTGCATT 361686 Score = 127 bits (140), Expect = 5e-24 Identities = 153/208 (74%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 225506 CAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTA 225565 ||||||| || ||| || || || | ||||| || | || || | ||| ||||| | Sbjct 361756 CAAGGTGCAGTGTGCTCTCCTTCTGAATGTTGTAGTCAGACAGGGTCCGCCCGTCTTCGA 361815 Query 225566 GCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGA 225625 ||||||||||||||||||| || || || ||||| || || || || |||||||| |||| Sbjct 361816 GCTGCTTCCCAGCGAAGATGAGGCGCTGCTGGTCTGGAGGGATTCCCTCCTTGTCCTGGA 361875 Query 225626 TCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGC 225685 |||| ||| || ||||||||||| || | ||||| || | ||||| ||||| | Sbjct 361876 TCTTCGCCTTGACGTTGTCGATGGTGTCCGAAGACTCCACCTCGAGGGTGATAGTCTTCC 361935 Query 225686 CCGTCAAAGTTTTTATGAACACTTGCAT 225713 | ||||| || || | ||| | ||||| Sbjct 361936 CGGTCAACGTCTTGACGAAGATCTGCAT 361963 Score = 111 bits (122), Expect = 4e-19 Identities = 135/184 (73%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 225506 CAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTA 225565 ||||||| || ||| || || |||| ||||| |||| | || | ||||| || | Sbjct 362316 CAAGGTGAAGCGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGTGTCCGACCATCCTCAA 362375 Query 225566 GCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGA 225625 ||||||| ||||||||||| || || || || || || |||||||| ||||| || |||| Sbjct 362376 GCTGCTTACCAGCGAAGATGAGGCGCTGCTGATCCGGGGGAATACCCTCCTTATCCTGGA 362435 Query 225626 TCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGC 225685 |||| ||| || ||||||||||| || | ||||| || | ||| || ||||| | Sbjct 362436 TCTTGGCCTTTACGTTGTCGATGGTGTCCGAAGACTCCACCTCGAGCGTAATGGTCTTCC 362495 Query 225686 CCGT 225689 | || Sbjct 362496 CAGT 362499 >seq152 Length=72955 Score = 123 bits (136), Expect = 6e-23 Identities = 197/280 (70%), Gaps = 2/280 (1%) Strand=Plus/Minus Query 7440 AACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATATTTTCTATGAT 7499 |||| | |||||||| |||| || |||||||||||| || ||||| ||||| | | Sbjct 34873 AACGCTTTATTTAATCTTTGCTGTCTTTTCTGGTATGATTGGTACAGCTTTTTCAGTATT 34814 Query 7500 TATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTTA 7559 || || ||||| ||| | ||| ||| ||||||||| || || ||| | | Sbjct 34813 AATTAGATTAGAGTTATCAAGTCCTGGTGTTCAAATATTACAAGGAGATCATCAATTATT 34754 Query 7560 CAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTAT 7619 || || |||||||| || ||||| ||||| ||||| |||||| | |||||||| | | | Sbjct 34753 TAATGTGATTATTACAGCACATGCTTTTGTAATGATCTTCTTTATGGTTATGCCTGCTCT 34694 Query 7620 GATAGGCGGTTTCGGAAATTGATTCGTTCCT-TTAATGATTGGTGCTCCTGATATGGCTT 7678 | || ||||| || || | || ||||| || | | | || || || |||||||| | Sbjct 34693 AGTGGGAGGTTTTGGTAACTACTTACTTCCTGTTCAAG-TAGGAGCACCAGATATGGCAT 34635 Query 7679 TTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCC 7718 |||| || | || ||||| ||||| ||| |||| || Sbjct 34634 TTCCTAGATTAAATAATATCTCCTTTTGGTTATTACCACC 34595 >seq343 Length=261204 Score = 86.0 bits (94), Expect = 1e-11 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 225548 AAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAA 225607 |||| |||||||| |||| || ||||||||||| ||||||| ||| || || || ||| Sbjct 219396 AAGTCCTCCCATCCTCTAAATGTTTCCCAGCGAATATAAGTCTTTGCTGATCAGGAGGAG 219337 Query 225608 TACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCA 225664 ||||||| |||| || ||| ||| || | | || |||||||| ||| | |||| Sbjct 219336 TACCTTCGATGTCCTGAATCCTTTCTTTGATAAAGTCAATGGTGTCAGAGCTCTCCA 219280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192497921671532