Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fomitopsis_20pinicola_20[genbank_20GCA_5F001931775.1_202017-01-04] 2,178 sequences; 45,982,938 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq1 147 3e-30 >seq1 Length=925270 Score = 147 bits (162), Expect = 3e-30 Identities = 352/527 (67%), Gaps = 14/527 (3%) Strand=Plus/Plus Query 48175 TAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATA 48234 |||| || ||||| || ||||| || |||||||| || || ||||| |||||||| |||| Sbjct 578360 TAATCAACTCGTTTGAGAATGTCAGTCCGGGCATGAGGCCGCGTTTCTTGAGCCAGAATA 578419 Query 48235 TTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCT 48294 | || ||||| || || || || || ||||| || ||||| || || || |||| || Sbjct 578420 TGGCGGCGAACGAGCCGGAGAAAAAGATGCCCTCCACGGCGGCGAAGGCCACCAGTCGCT 578479 Query 48295 CTCCGTAACTGGCTTCGTTGTGT---ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTA 48351 | || |||| | |||| | ||||| || | ||||| || ||||||||||| | Sbjct 578480 CAGCGAAACTCGACCGCTTGTCTGCGATCCAGCGGAGAGCCCAGTCCGCCTTCTTCTTGA 578539 Query 48352 CACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATTGC-TATCTTTAACG 48410 || || |||| || || || | ||| ||| || ||| |||| || || | | Sbjct 578540 TGCATGGTATTGCCTCGATGGCGTCAAATAGACGGTCGCGTTC-TTGCGGGTCCTTGATG 578598 Query 48411 TAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAAT 48470 || ||||| |||| || || ||||||| || || || || || || || || Sbjct 578599 TATGTATCGATTAGGAGCGAGTATGTTTCGGAATGTATGTTCTCCATCATGATTTGGAAG 578658 Query 48471 CCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTC 48530 ||||| ||||| | ||||| | ||| ||||| | | || || || | | ||| Sbjct 578659 CCGTAGAAACACCGTGCTTCCGCAGCCTGCACCTCGTTCGAGAAGCGCTCTACGAGGTTC 578718 Query 48531 TCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATAT--- 48587 || || ||||| ||||| ||||| || || || | || ||| || |||| | Sbjct 578719 TCGTTCACTATGCCATCGGATGCAGCGAAGAAGGCGAGGACGTGTGAGATGAAATGTCGC 578778 Query 48588 ---TTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCT 48644 | |||||| || | | | |||||||| | || | || | ||||| ||| Sbjct 578779 TCGTCGTCGTTG--AGGC-GATGGTTCCAGTCCCAGTGGTCGTGCGACAGATCTATCTCT 578835 Query 48645 TCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATAT 48691 || |||||||| || || ||||| |||| || ||||| |||||| Sbjct 578836 TCTGCTGTCCAGAAAGAGGCCTCCGCTTGCTTGTACATGCGCCATAT 578882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694649887641920