Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fomitopsis_20pinicola_20[genbank_20GCA_5F001931775.1_202017-01-04] 2,178 sequences; 45,982,938 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq1 154 2e-32 >seq1 Length=925270 Score = 154 bits (170), Expect = 2e-32 Identities = 353/524 (67%), Gaps = 8/524 (2%) Strand=Plus/Plus Query 46664 TAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATA 46723 |||| || ||||| || ||||| || || ||||| || || || || |||||||| |||| Sbjct 578360 TAATCAACTCGTTTGAGAATGTCAGTCCGGGCATGAGGCCGCGTTTCTTGAGCCAGAATA 578419 Query 46724 TAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCT 46783 | || ||||| || || || || || ||||| || || || ||||| || || |||| || Sbjct 578420 TGGCGGCGAACGAGCCGGAGAAAAAGATGCCCTCCACGGCGGCGAAGGCCACCAGTCGCT 578479 Query 46784 CTCCGTAACTGG-CATCAT-TATGA-ATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTA 46840 | || |||| | | | | | || ||||| | ||||||| || ||||| ||||| | Sbjct 578480 CAGCGAAACTCGACCGCTTGTCTGCGATCCAGCGGAGAGCCCAGTCCGCCTTCTTCTTGA 578539 Query 46841 CACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATCACTATCTTTAACAT 46900 || || |||| || || || | ||| ||| || ||| | || || | | Sbjct 578540 TGCATGGTATTGCCTCGATGGCGTCAAATAGACGGTCGCGTTCTTGCGGGTCCTTGATGT 578599 Query 46901 ATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATC 46960 ||||||| |||| || || |||| ||||| ||||| || || || || || | Sbjct 578600 ATGTATCGATTAGGAGCGAGTATGTTTCGGAATGTATGTTCTCCATCATGATTTGGAAGC 578659 Query 46961 CGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCT 47020 |||| ||||| | |||||| | | ||| ||||| | | || || || | |||| Sbjct 578660 CGTAGAAACACCGTGCTTCCGCAGCCTGCACCTCGTTCGAGAAGCGCTCTACGAGGTTCT 578719 Query 47021 CATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTT 47080 | |||||||| ||||| ||||| || || || | || ||| || |||| | | Sbjct 578720 CGTTCACTATGCCATCGGATGCAGCGAAGAAGGCGAGGACGTGTGAGATGAAATGTCGCT 578779 Query 47081 CATCG--GT--AGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCA 47136 | ||| || || | | | |||||||| | || | || | ||||| ||||| Sbjct 578780 CGTCGTCGTTGAGGC-GATGGTTCCAGTCCCAGTGGTCGTGCGACAGATCTATCTCTTCT 578838 Query 47137 GCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATAT 47180 ||||||||||| || ||||| |||| || ||||| |||||| Sbjct 578839 GCTGTCCAGAAAGAGGCCTCCGCTTGCTTGTACATGCGCCATAT 578882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712914990360960