Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fomitopsis_20pinicola_20[genbank_20GCA_5F001931775.1_202017-01-04] 2,178 sequences; 45,982,938 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq117 149 2e-30 seq1836 141 2e-28 seq343 96.9 8e-15 seq679 84.2 5e-11 >seq117 Length=384797 Score = 149 bits (164), Expect = 2e-30 Identities = 156/205 (76%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || | || || || || ||||||||||||||||| || ||| Sbjct 361960 CAGATCTTCGTCAAGACGTTGACCGGGAAGACTATCACCCTCGAGGTGGAGTCTTCGGAC 361901 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| ||||| |||||||| || ||||||||||| |||||||| Sbjct 361900 ACCATCGACAACGTCAAGGCGAAGATCCAGGACAAGGAGGGAATCCCTCCAGACCAGCAG 361841 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || || ||||||||||| || |||| || | || || ||| | Sbjct 361840 CGCCTCATCTTCGCTGGGAAGCAGCTCGAAGACGGGCGGACCCTGTCTGACTACAACATT 361781 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || |||||||| |||| Sbjct 361780 CAGAAGGAGAGCACACTGCACCTTG 361756 Score = 136 bits (150), Expect = 1e-26 Identities = 153/205 (75%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| ||||| || || || || || ||||| ||||| || || ||| Sbjct 362242 CAGATCTTCGTGAAGACTCTTACGGGCAAGACTATTACCCTTGAGGTTGAGTCTTCTGAC 362183 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || ||||| ||||||||| ||||| || || || || || ||||||||| Sbjct 362182 ACCATCGACAATGTCAAGGCAAAGATTCAAGACAAGGAGGGTATTCCACCTGACCAGCAA 362123 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || || |||||||| ||||| | || || |||| || ||| || Sbjct 362122 CGTCTGATCTTTGCTGGCAAGCAGCTCGAGGATGGTCGCACGCTCTCCGACTACAACATC 362063 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || ||||||| Sbjct 362062 CAGAAGGAGAGCACTCTCCATCTTG 362038 Score = 132 bits (146), Expect = 1e-25 Identities = 142/188 (76%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || | || || || |||||||| |||||||| || || ||| Sbjct 361682 CAGATCTTCGTCAAGACGTTGACCGGGAAGACGATCACTCTCGAGGTTGAGTCGTCGGAC 361623 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| |||||||||||||| || || || || || |||||||| Sbjct 361622 ACCATCGACAACGTCAAGGCGAAGATTCAGGACAAGGAGGGCATTCCGCCTGACCAGCAG 361563 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || || ||| | || || || | |||||| | ||||||||| || Sbjct 361562 CGCCTGATCTTCGCTGGCAAGCAGTTGGAGGACGGCCGTACTCTTTCGGATTATAACATC 361503 Query 178104 CAAAAAGA 178111 || || || Sbjct 361502 CAGAAGGA 361495 Score = 118 bits (130), Expect = 3e-21 Identities = 139/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || ||||| || || || || || ||||||||||| || ||| Sbjct 362520 CAGATCTTTGTCAAGACCCTCACTGGGAAGACCATTACGCTCGAGGTGGAGTCTTCGGAC 362461 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| ||||| || ||||| ||||| || || || || || ||||| ||||| Sbjct 362460 ACCATCGACAACGTAAAGGCCAAGATCCAGGATAAGGAGGGTATTCCCCCGGATCAGCAG 362401 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || || ||||| || ||||| |||| || |||| || ||| || Sbjct 362400 CGCCTCATCTTCGCTGGTAAGCAGCTTGAGGATGGTCGGACACTCTCCGACTACAACATC 362341 Query 178104 CAAAAAGA 178111 || || || Sbjct 362340 CAGAAGGA 362333 >seq1836 Length=575610 Score = 141 bits (156), Expect = 2e-28 Identities = 155/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || ||||| ||||| || || || || ||||| || ||| || Sbjct 191608 CAAATATTCGTCAAGACGCTCACGGGAAAGACCATAACGCTGGAGGTTGAGTCCTCCGAT 191549 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| |||||| ||||| || || || |||||||| || ||||| Sbjct 191548 ACCATCGACAACGTCAAGGCAAAGATCCAGGATAAGGAGGGCATCCCTCCCGATCAGCAG 191489 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| |||||| | ||||| || |||| || |||| || || | Sbjct 191488 CGCCTCATCTTCGCCGGGAAACAGTTGGAAGACGGCCGGACGCTGTCCGACTACAATATT 191429 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || ||||| Sbjct 191428 CAGAAGGAGTCGACCCTCCACCTTGT 191403 Score = 132 bits (146), Expect = 1e-25 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || || || || || || ||||| | ||||| || || ||| Sbjct 191380 CAGATCTTCGTGAAGACGCTTACCGGGAAGACCATCACGTTGGAGGTCGAGTCTTCGGAC 191321 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| |||||||| ||||| || || || || || ||||| || ||||||||| Sbjct 191320 ACGATCGACAACGTCAAGGCGAAGATCCAAGATAAGGAGGGTATCCCGCCCGACCAGCAA 191261 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || || ||||| || || || | |||||| | || |||||| || Sbjct 191260 CGTCTCATCTTCGCTGGGAAGCAGCTTGAGGACGGCCGTACTCTTTCGGACTATAACATC 191201 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || |||||||| || Sbjct 191200 CAGAAGGAGTCGACGCTGCATCTCGT 191175 >seq343 Length=261204 Score = 96.9 bits (106), Expect = 8e-15 Identities = 116/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 177928 TTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCA 177987 ||||||| || || ||| ||| ||||||| | | |||| ||||| ||||||| Sbjct 219238 TTTTCGTCAAGACCAGCACCGGAGAAACGATACTCGTACCACTGGAGAGCTCTGACACCA 219297 Query 177988 TCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGAC 178047 | || ||||| ||| ||||||||||| ||||| | ||||| || |||||| ||| Sbjct 219298 TTGACTTTATCAAAGAAAGGATTCAGGACATCGAAGGTACTCCTCCTGATCAGCAAAGAC 219357 Query 178048 TTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACT 178085 |||| ||||| || ||||| | || ||||| |||||| Sbjct 219358 TTATATTCGCTGGGAAACATTTAGAGGATGGGAGGACT 219395 >seq679 Length=256444 Score = 84.2 bits (92), Expect = 5e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || || ||||| || || ||||||||||| |||||||| || ||| Sbjct 229469 CAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTCTGAC 229410 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024 |||||||| ||||| || ||||| |||||||| || || Sbjct 229409 ACCATCGACAACGTAAAGGCCAAGATCCAGGACAAGGAGGG 229369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203697609128532