Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fomitopsis_20pinicola_20[genbank_20GCA_5F001931775.1_202017-01-04] 2,178 sequences; 45,982,938 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq117 167 2e-36 seq1836 156 4e-33 seq679 104 2e-17 seq1666 100 3e-16 >seq117 Length=384797 Score = 167 bits (184), Expect = 2e-36 Identities = 182/238 (76%), Gaps = 3/238 (1%) Strand=Plus/Plus Query 41627 ACATCACCG-CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTT 41685 |||||| | ||||| || ||||| | ||| || || ||||||||||||||||| ||||| Sbjct 361449 ACATCAGAGACCGCCACGGAGACGCAGCACGAGGTGGAGCGTGCTCTCCTTCTGGATGTT 361508 Query 41686 ATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTG 41745 ||| || || || || || |||| || | ||||||||| ||||| ||||||||||| || Sbjct 361509 ATAATCCGAAAGAGTACGGCCGTCCTCCAACTGCTTGCCAGCGAAGATCAGGCGCTGCTG 361568 Query 41746 GTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGC 41804 ||| | |||| || |||||||||| ||| | || || | ||| | | | ||||| Sbjct 361569 GTCAGGCGGAATGCCCTCCTTGTCC-TGAATCTTCGCCTTGACGTTGTCGATGGTGTCCG 361627 Query 41805 TCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||| ||||| | || ||||| || || |||| |||||| ||||| |||||||| Sbjct 361628 ACGACTCAACCTCGAGAGTGATCGTCTTCCCGGTCAACGTCTTGACGAAGATCTGCAT 361685 Score = 147 bits (162), Expect = 2e-30 Identities = 166/219 (76%), Gaps = 4/219 (2%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 |||| || || || ||||| |||||||||||||||||||| ||||| || ||||| ||| Sbjct 361748 AGACTTACCA--AGGTGCAGTGTGCTCTCCTTCTGAATGTTGTAGTCAGACAGGGTCCGC 361805 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 |||| ||||||||||| || ||||| || |||||||| ||||| | || | | |||| Sbjct 361806 CCGTCTTCGAGCTGCTTCCCAGCGAAGATGAGGCGCTGCTGGTCTGGAGGGATTCCCTCC 361865 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGT 41823 |||||| || | || || | ||| | | | ||||| ||||||||||| | || Sbjct 361866 TTGTCC-TGGATCTTCGCCTTGACGTTGTCGATGGTGTCCGAAGACTCCACCTCGAGGGT 361924 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || |||| |||||| ||||| |||||||| Sbjct 361925 GATAGTCTTCCCGGTCAACGTCTTGACGAAGATCTGCAT 361963 Score = 140 bits (154), Expect = 3e-28 Identities = 170/227 (75%), Gaps = 5/227 (2%) Strand=Plus/Plus Query 41638 GCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAG 41697 ||||||| ||||| || || || ||||||||||||||||| ||||| ||||||||||| Sbjct 362302 GCCGCGTT-ACGTACCA--AGGTGAAGCGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAG 362358 Query 41698 GGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAAC 41757 || || | || || |||||||| || ||||| || |||||||| || |||| ||||| Sbjct 362359 TGTCCGACCATCCTCAAGCTGCTTACCAGCGAAGATGAGGCGCTGCTGATCCGGGGGAAT 362418 Query 41758 GCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCT 41816 | |||||| ||| || | || || | ||| | | | ||||| |||||||||| Sbjct 362419 ACCCTCCTTATCC-TGGATCTTGGCCTTTACGTTGTCGATGGTGTCCGAAGACTCCACCT 362477 Query 41817 CCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 | | ||| || || || || || || ||||| || || ||||||||| Sbjct 362478 CGAGCGTAATGGTCTTCCCAGTGAGGGTCTTGACAAAGATCTGCATG 362524 Score = 136 bits (150), Expect = 4e-27 Identities = 156/207 (75%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 41657 AGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGC 41716 ||||| || |||||||||||||| ||||| ||||||||||| ||||| | || |||||| Sbjct 362040 AGATGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGACCATCCTCGAGC 362099 Query 41717 TGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATT 41776 |||||||| || || ||||| || || ||||| | |||| | |||||||| | ||| | Sbjct 362100 TGCTTGCCAGCAAAGATCAGACGTTGCTGGTCAGGTGGAATACCCTCCTTGT-CTTGAAT 362158 Query 41777 TTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACC 41835 ||||| | || | | | ||||| ||||| ||||| | || || || || || Sbjct 362159 CTTTGCCTTGACATTGTCGATGGTGTCAGAAGACTCAACCTCAAGGGTAATAGTCTTGCC 362218 Query 41836 CGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| || ||||| ||||| |||||||| Sbjct 362219 CGTAAGAGTCTTCACGAAGATCTGCAT 362245 Score = 109 bits (120), Expect = 5e-19 Identities = 85/100 (85%), Gaps = 1/100 (1%) Strand=Plus/Plus Query 41657 AGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGC 41716 ||||| || |||||||||||||||||||| ||||| || || || ||| | || |||||| Sbjct 362602 AGATGAAGGGTGCTCTCCTTCTGAATGTTGTAGTCAGAAAGAGTACGCCCATCCTCGAGC 362661 Query 41717 TGCTTGCCGGCGAATATCAGGCGCTGTTGGTC-CGCGGGA 41755 |||||||||||||| || |||||||| ||||| |||||| Sbjct 362662 TGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCAGGCGGGA 362701 >seq1836 Length=575610 Score = 156 bits (172), Expect = 4e-33 Identities = 173/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || || || | ||| || || || ||| ||||||||| ||||| || ||||| Sbjct 191896 CCGCCACGGAGGCGAAGCACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCGGAC 191955 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || |||||||||||||| ||||| |||| |||||| ||||| | || Sbjct 191956 AGGGTGCGGCCATCCTCGAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGG 192015 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||||||| ||| || |||| ||| | | | |||||| |||||| || Sbjct 192016 ATGCCCTCCTTGTCCTGGATCTTCGCCTTC-ACGTTGTCAATCGTGTCGGACGACTCGAC 192074 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | ||| ||||| || ||||| || ||||| ||||| |||||||| Sbjct 192075 TTCGAGCGTGATCGTCTTGCCCGTGAGAGTCTTAACGAAGATCTGCAT 192122 Score = 129 bits (142), Expect = 5e-25 Identities = 158/212 (75%), Gaps = 3/212 (1%) Strand=Plus/Plus Query 41653 CACC-AGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGT 41711 |||| ||||| || || ||||||||| ||||| ||||| || || ||||| |||| | Sbjct 191684 CACCGAGATGAAGGGTTGACTCCTTCTGGATGTTGTAGTCAGACAGCGTGCGGCCGTCTT 191743 Query 41712 CGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCA 41771 | | ||||||||| || || ||||||||||| || || | || | || |||||||||| Sbjct 191744 CCAACTGCTTGCCCGCAAAAATCAGGCGCTGCTGATCGGGAGGGATGCCCTCCTTGTCCT 191803 Query 41772 TGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTT 41830 ||| || |||| ||| | | | |||||| |||||| || || | ||| ||||| Sbjct 191804 GGATCTTCGCCTTC-ACGTTGTCAATCGTGTCGGACGACTCGACTTCGAGCGTGATCGTC 191862 Query 41831 TTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || ||||| || ||||| ||||| || ||||| Sbjct 191863 TTGCCCGTGAGAGTCTTGACGAAGATTTGCAT 191894 Score = 122 bits (134), Expect = 8e-23 Identities = 161/220 (73%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||||| | ||||| || ||| |||||| || ||||| || || || || || | Sbjct 190940 AGACGTACCG--AGATGAAGGGTGGACTCCTTTTGGATGTTGTAATCCGAAAGCGTCCTG 190997 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 |||| || | |||||| || ||||| || || ||||| ||||| | ||||| | |||| Sbjct 190998 CCGTCCTCCAACTGCTTCCCAGCGAAGATGAGACGCTGCTGGTCTGGGGGAATACCCTCC 191057 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACA-GTGTCGCTCGACTCCACCTCCACCGT 41823 |||||| |||||| ||| | || | || |||||| |||||| ||||| | || Sbjct 191058 TTGTCCTGGATTTTCGCCTTGA-CGTTGTCAATCGTGTCGGACGACTCGACCTCAAGAGT 191116 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||||| || || |||| |||||| || |||||||||||| Sbjct 191117 GATCGTCTTCCCGGTCAACGTCTTCACAAAAATCTGCATG 191156 Score = 122 bits (134), Expect = 8e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | || ||||||||||| ||||||||| ||||||||||| || Sbjct 191156 GCCTCCACGAAGACGGAGGACGAGATGCAGCGTCGACTCCTTCTGGATGTTATAGTCCGA 191215 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || || || |||| || |||||||| || ||||| || || || || ||||| | || Sbjct 191216 AAGAGTACGGCCGTCCTCAAGCTGCTTCCCAGCGAAGATGAGACGTTGCTGGTCGGGCGG 191275 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | | |||||| | | || | || || | ||| | | | ||||| ||||| | Sbjct 191276 GATACCCTCCTTAT-CTTGGATCTTCGCCTTGACGTTGTCGATCGTGTCCGAAGACTCGA 191334 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||| ||| || || || || || |||||||| ||||| |||||||| Sbjct 191335 CCTCCAACGTGATGGTCTTCCCGGTAAGCGTCTTCACGAAGATCTGCAT 191383 Score = 122 bits (134), Expect = 8e-23 Identities = 145/194 (75%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730 |||||||||||| || |||||||| || || || |||| || | ||| || |||||||| Sbjct 191420 CTCCTTCTGAATATTGTAGTCGGACAGCGTCCGGCCGTCTTCCAACTGTTTCCCGGCGAA 191479 Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGA 41790 || |||||||| || || | || | || |||||| ||| || | ||||| | ||| Sbjct 191480 GATGAGGCGCTGCTGATCGGGAGGGATGCCCTCCTTATCC-TGGATCTTTGCCTTGACGT 191538 Query 41791 CGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTA 41849 | | | || ||| ||||| ||||||| |||||| || || ||||| |||||||| | Sbjct 191539 TGTCGATGGTATCGGAGGACTCAACCTCCAGCGTTATGGTCTTTCCCGTGAGCGTCTTGA 191598 Query 41850 CGAAAATCTGCATG 41863 |||| || |||||| Sbjct 191599 CGAATATTTGCATG 191612 Score = 91.5 bits (100), Expect = 1e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || || || || ||| ||||||||| ||||| ||||| ||| Sbjct 192124 CCACCACGGAGACGGAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAG 192183 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC 41748 || ||||| | || ||||||||||| || ||||| || |||||||| ||||| Sbjct 192184 AGCGTGCGGCCATCCTCGAGCTGCTTTCCAGCGAAGATGAGGCGCTGCTGGTC 192236 >seq679 Length=256444 Score = 104 bits (114), Expect = 2e-17 Identities = 87/107 (81%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 |||| ||||| || ||||||||| ||||| ||||| ||||||||||| |||| ||| Sbjct 229209 ACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCG 229268 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCT 41760 ||||||||||| ||||| || |||||||| ||||| | ||| | ||| Sbjct 229269 AGCTGCTTGCCTGCGAAGATGAGGCGCTGCTGGTCTGGGGGGATGCT 229315 >seq1666 Length=152845 Score = 100 bits (110), Expect = 3e-16 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| || || ||| ||||||||| ||||| ||||| | Sbjct 77710 CCACCACGCAGACGGAGCACCAAGTGTAGGGTGGACTCCTTCTGGATGTTGTAGTCACTG 77769 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC 41748 || ||||| |||| || ||||||||||||||||| |||| |||||||||||| Sbjct 77770 AGAGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAGCGCTGTTGGTC 77822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462291413773600