Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ganoderma_20boninense_20[genbank_20GCA_5F001855635.1_202016-10-28] 18,903 sequences; 60,325,844 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq10137 109 5e-19 seq6477 104 2e-17 seq13613 93.3 4e-14 >seq10137 Length=11321 Score = 109 bits (120), Expect = 5e-19 Identities = 120/160 (75%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 139609 GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 139668 ||| || ||||| ||||| ||| |||| ||||| ||||| |||||||| ||||| || || Sbjct 3349 GTCCTCCAGCTGCTTACCGGCAAAGATAAGACGCTGCTGGTCGGGAGGGATGCCCTCCTT 3408 Query 139669 GTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 ||| ||| || || | | || | ||||||| || ||||||||| | ||| | Sbjct 3409 GTCCTGGATCTTCGCCTTGACGTTGTCGATGGTGTCGGAGGACTCCACCTCGAGGGTGAT 3468 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 |||||||||||||| || || ||||| || |||||| || Sbjct 3469 GGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCATACCT 3508 >seq6477 Length=89905 Score = 104 bits (114), Expect = 2e-17 Identities = 148/206 (72%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 139561 GTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTG 139620 ||||| || ||||| || || |||||||| ||| || |||| || || ||||| Sbjct 7135 GTGAAGGGTGGACTCCTTCTGGATGTTATAGTCGGACAAGGTGCGACCATCCTCAAGCTG 7076 Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680 || || || |||| ||||| ||||| |||||||| || || || ||||| ||| | | Sbjct 7075 CTTCCCGGCGAAGATGAGACGCTGCTGGTCGGGAGGGATCCCCTCCTTGTCT-TGAATCT 7017 Query 139681 TTGTTTTAGCTGT-TCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGG 139739 | | ||| | | || | ||||| | | ||| ||||| | || | |||||| |||| Sbjct 7016 TCGCCTTAACGTTGTCGATAGTGTCCGAAGACTCGACCTCGAGAGTGATCGTCTTTCCGG 6957 Query 139740 TCAACGTTTTTACGAATATTTGCATA 139765 ||||||| || ||||| ||||||||| Sbjct 6956 TCAACGTCTTCACGAAGATTTGCATA 6931 >seq13613 Length=18521 Score = 93.3 bits (102), Expect = 4e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 52564 AAAAAGGATGATTGGGCATTGAAATGGATCGAAAACGACAAAGCCACTTTTGCCGAACGT 52623 || |||| || ||||||||| ||||| | ||||| | || || || || || Sbjct 17432 AAGAAGGCCGACTGGGCATTGCGTTGGATAGCGGACGACCAGTCCGTGTTCGCTGAGCGA 17373 Query 52624 CTGGTCGCGTTTGCTATAGTGGAAGGTGTGtttttttCGGGTAGTTTTGCGGCAATATTT 52683 ||||| |||||||| ||||| || | || || || || ||||||| | || || Sbjct 17372 CTGGTGGCGTTTGCGGCCGTGGAGGGCATATTCTTCTCTGGGTGTTTTGCCTCCATCTTC 17313 Query 52684 TACATCAA-AACCTTGGGCATAATGCCCGGCCTCACGTTTAGCAACGAGTTGATATCGCG 52742 | |||| || | ||||| | ||||||||||| ||||| |||||| | |||||||| Sbjct 17312 TGGCTCAAGAAGCGTGGGC-TCATGCCCGGCCTGACGTTCTCAAACGAGCTCATATCGCG 17254 Query 52743 CGACGAAGGAATGCACACAGATTTTGCGTG 52772 |||||| || ||||| || || || || || Sbjct 17253 CGACGAGGGCATGCATACCGACTTCGCTTG 17224 Score = 89.7 bits (98), Expect = 5e-13 Identities = 112/151 (74%), Gaps = 2/151 (1%) Strand=Plus/Minus Query 52911 GATGTGCGAGTACATCGAGTTTGTTGCGGACAGACTG-TTGATGCAGCTCGGTCAGCCGA 52969 ||||||| | |||||||||||||| |||||||| ||| ||| ||| ||||| | || Sbjct 17034 GATGTGCCAATACATCGAGTTTGTAGCGGACAGGCTGCTTGTTGC-TCTCGGAAATGAGA 16976 Query 52970 AATACTATAATGCGCGTAACCCCTTTTCGTTTATGAACAACATATCGCTCGAGGGCAAAA 53029 | |||| || | |||||| ||| || ||| ||| || ||||| ||||| || | Sbjct 16975 AGCACTACAACTCAAATAACCCGTTTGACTTCATGGACATGATTTCGCTTGAGGGGAAGA 16916 Query 53030 CAAACTTTTTCGAGAGACGTGTGGGCGAGTA 53060 | ||||| ||||||| ||| ||| |||||| Sbjct 16915 CCAACTTCTTCGAGAAACGGGTGTCCGAGTA 16885 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495946786277600