Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ganoderma_20boninense_20[genbank_20GCA_5F001855635.1_202016-10-28] 18,903 sequences; 60,325,844 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq12968 116 6e-22 seq10405 116 6e-22 seq5997 107 3e-19 seq5986 107 3e-19 seq773 89.7 8e-14 seq12999 82.4 1e-11 >seq12968 Length=11770 Score = 116 bits (128), Expect = 6e-22 Identities = 119/153 (78%), Gaps = 2/153 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||||| |||| |||| || || || |||||||| || ||||||||||| || || Sbjct 11255 GCTAAGCGTCACCGCAAGATC-CTCCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 11197 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || ||||| || || ||||| || ||||||||| |||| || | |||| || |||| Sbjct 11196 TCGCCGTCTTGCCCGCCGTGGCGGTGTCAAGCGTATCTCCGGCCTCATCTACGAGGAGAC 11137 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGT 16584 |||| ||| | |||||||||||| | | ||| Sbjct 11136 CCGTGGTGTCCTCAAGATCTTCCTCGAAAACGT 11104 >seq10405 Length=1809 Score = 116 bits (128), Expect = 6e-22 Identities = 119/153 (78%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGC-AGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||||| ||| ||||| || || || |||||||| || ||||||||||| || || Sbjct 434 GCTAAGCGTCACCGCAAGATC-CTCCGCGACAACATCCAGGGTATCACCAAGCCCGCCAT 492 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||| || || ||||| || ||||||||| |||| || | |||| || |||| Sbjct 493 CCGCCGTCTCGCCCGCCGTGGCGGTGTCAAGCGTATCTCCGGCCTCATCTACGAGGAGAC 552 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGT 16584 || | ||| | |||||||||||| | | ||| Sbjct 553 CCGCGGTGTCCTCAAGATCTTCCTCGAAAACGT 585 >seq5997 Length=1970 Score = 107 bits (118), Expect = 3e-19 Identities = 92/114 (81%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 16471 AGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 ||| || |||||||| || || |||||||| ||||| ||||| || ||||||||| |||| Sbjct 1736 AGGTATTACCAAGCCCGCCATTCGTCGTCTTGCTCGCCGTGGAGGCGTCAAGCGTATCTC 1677 Query 16531 TGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGT 16584 || | ||||||| |||| ||||| |||| | |||||||||||| ||| ||| Sbjct 1676 GGGTCTCATCTATGAGGAGACTCGTGGTGTTCTCAAGATCTTCCTCGAGAACGT 1623 >seq5986 Length=15757 Score = 107 bits (118), Expect = 3e-19 Identities = 92/114 (81%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 16471 AGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 ||| ||||||||||| || || ||||| || ||||| ||||| || ||||||||| |||| Sbjct 1416 AGGTATCACCAAGCCCGCCATTCGTCGCCTTGCTCGCCGTGGAGGCGTCAAGCGTATCTC 1357 Query 16531 TGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGT 16584 || | ||||||| |||| ||||| |||| | |||||||||||| ||| ||| Sbjct 1356 GGGTCTCATCTATGAGGAGACTCGTGGTGTTCTCAAGATCTTCCTCGAGAACGT 1303 >seq773 Length=28764 Score = 89.7 bits (98), Expect = 8e-14 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 16487 GCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAA 16546 || ||||| ||||| || ||||||||||| ||||||||| | ||||| | |||| || Sbjct 13610 GCCATCCGCCGTCTCGCCCGTCGTGGTGGTGTCAAGCGTATTTCTGGTCTCATCTACGAG 13669 Query 16547 GAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGA 16593 || | ||| | ||| ||||||| |||||| ||| |||||||| ||| Sbjct 13670 GAAACTCGCGGTGTCCTGAAGATTTTCCTCGAGAACGTTATCCGTGA 13716 >seq12999 Length=8530 Score = 82.4 bits (90), Expect = 1e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 16487 GCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAA 16546 || ||||||||||| ||||| |||||||| || |||||| |||| || | |||| || Sbjct 5275 GCCATCCGTCGTCTTGCTCGCCGTGGTGGTGTGAAGCGTATCTCCGGTCTCATCTACGAG 5216 Query 16547 GAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGT 16584 |||| ||||| ||| | ||||||||||| ||| ||| Sbjct 5215 GAGACTCGTGGTGTCCTCAAGATCTTCCTTGAGAACGT 5178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79057916854779