Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ganoderma_20boninense_20[genbank_20GCA_5F001855635.1_202016-10-28] 18,903 sequences; 60,325,844 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq3382 118 2e-21 seq13619 107 4e-18 seq13655 96.9 7e-15 seq13613 96.9 7e-15 >seq3382 Length=3397 Score = 118 bits (130), Expect = 2e-21 Identities = 139/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 279699 GGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGT 279758 || ||||| || |||||||||||||||||||| || || | || ||||| || | || Sbjct 2401 GGCTCTCTCTCCGGTGGTTGGAAGATGAAGCTCGCGCTTGCCCGTGCCATGCTCTTCCGC 2460 Query 279759 GCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGG 279818 || || |||| ||||| || ||||| ||||||||| ||||| | |||| | || ||| Sbjct 2461 GCGGACATCCTCCTGCTCGACGAGCCGACCAACCACTTGGACGTCGTCAACATCGCTTGG 2520 Query 279819 CTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCT 279878 || | | |||||| ||||| || | | | ||| |||| ||||| ||||||||| Sbjct 2521 CTCGAGAACTACCTTACCAGCCTCACCACCTGCACGTCCATCATCGTCTCGCACGACTCT 2580 Query 279879 GGCTTCCT 279886 || ||||| Sbjct 2581 GGTTTCCT 2588 Score = 102 bits (112), Expect = 2e-16 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 280254 TGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCACGCTTTCCACCACATCGAG 280313 |||||||| |||||| || || | ||||||||| |||||||| |||||||||||||| Sbjct 2961 TGGAAGCACCCCAACTTGGTCATCGGTTACGTCGCGCAGCACGCCTTCCACCACATCGAC 3020 Query 280314 AACCACCTGGACATGACTCCTAACCAATACATTCAGTGGCGCTATGCAAGTGGGCAGGAT 280373 |||||||| |||| ||| || | ||||||| | |||||||| | ||| ||||| Sbjct 3021 AACCACCTCGACAAGACCCCGCTCGAATACATGCTCTGGCGCTACCAGACTGGCGAGGAT 3080 Query 280374 CTGGAG 280379 || ||| Sbjct 3081 CTCGAG 3086 Score = 96.9 bits (106), Expect = 7e-15 Identities = 131/182 (72%), Gaps = 3/182 (2%) Strand=Plus/Plus Query 279318 GACGAAGCAGAGAAGGAGACTGAGCCAGGTGAGGATCTGTGTGACTGTGATTTCTCGCTC 279377 ||||| || ||| | ||| ||| || ||||| ||||| |||| | ||||||||| Sbjct 1970 GACGAGGCTGAGGACGAGGAGGAG---GGCGAGGACCTGTGCAACTGCCAGTTCTCGCTC 2026 Query 279378 GCATATGGTGGGAAGATTCTGCTAAACTCTACCCGCCTCAACATCAAGCGTGGCAACCGG 279437 || || |||| ||||| ||||| ||| | | ||||| ||||||||||| |||| Sbjct 2027 GCGTACGGTGCCAAGATCCTGCTCAACACCGCGAGCCTCCGTCTCAAGCGTGGCCACCGC 2086 Query 279438 TATGGTCTCATCGGTCCCAATGGAGCGGGTAAGAGCACTCTAATGCGCGCCATTGCAAAC 279497 || ||||| ||||| ||| || | || ||| |||||| |||||||| || | ||| Sbjct 2087 TACGGTCTTTGCGGTCGCAACGGTACCGGAAAGTCCACTCTCATGCGCGCGATCACCAAC 2146 Query 279498 GG 279499 || Sbjct 2147 GG 2148 >seq13619 Length=8937 Score = 107 bits (118), Expect = 4e-18 Identities = 354/540 (66%), Gaps = 13/540 (2%) Strand=Plus/Minus Query 251844 GTGCAGACCCTCGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCC 251903 ||||| ||||||||| || ||||| |||||| || | || || ||||||| || Sbjct 651 GTGCATACCCTCGTCACGCGAGATGAGCTCGTTCGAGAACGTGAGACCGGGCATCAAGCC 592 Query 251904 ACGGTTCCTGAGCCAGAAGATTG-CGCAAAAGGATCCAGAGAACAGCAGACCCTCGACAC 251962 || ||| ||||||||||||||| |||||| ||| |||||||| | | ||||||||| Sbjct 591 GCGCTTCTTGAGCCAGAAGATTGACGCAAA-GGACCCAGAGAAGAAGATACCCTCGACCG 533 Query 251963 ACACCCATGCAACAAGGCGCTCAGCAAA---CGACTTGTCCTGCGACAAGAACTTCTGTG 252019 | | || ||||||||||| || || |||| | ||| | | ||| Sbjct 532 CGGCGAAGGCGACAAGGCGCTCCGCGAAAGTAGACTCCGTATCCGAGATCCAGCGGAGTG 473 Query 252020 CCCATGCTGCCTTCTTTCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTC- 252078 |||| | |||||||| | |||||| ||||| |||||||| ||||| | | || Sbjct 472 CCCAGTCGGCCTTCTTCTTGATGCAGGGGATGGTTTCAATTGCATCGAAGAG-GTGCTCA 414 Query 252079 CGCTCGGCAT--CGTCCTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGA 252136 |||| || | ||| | |||| | || | ||||| ||||| | || || |||| Sbjct 413 CGCT--GCTTGGGGTCTTTGATGTAGGTGTCGATGAGGAGGGAGTAGGTTTCGGAGTGGA 356 Query 252137 TGGATTCGTTGAACATCTGGTAAGCATAGAATAGACGCGCGGAAGGGTCGGTGACTTCCG 252196 || || | | |||||| | | ||||| || || || | | ||| || Sbjct 355 TGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAGCGGGCCTCAGCGGCCTGGACCTCGT 296 Query 252197 TGGAAAAGTTGTTTG-CAATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCA 252255 |||| || ||| | | | |||||| |||| || ||||| | | || |||||| | Sbjct 295 TGGAGAA-ACGTTCGACGAGGTTCTCGTTCACAATACCATCTGAGGCGGCGAAGAAGGCG 237 Query 252256 AGAATGGTCTTGATGAAGTGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATG 252315 || | ||||||||| ||||||||||||||||| || |||| ||| | Sbjct 236 AGGACATGAGAGATGAAGTGGCGCTCATCGTCGTTGAGACGGTTGTGCCAATCGTGGAGA 177 Query 252316 TCCTGATTCAGAGGAACTTCTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACATT 252375 |||| ||| | || ||| | ||||| || | | | | ||||||||||||||| Sbjct 176 TCCTTGGAAAGATCCATCTCCTCCGCGGTCCAAAAGGAAGCCTCGGCCTTCTTGTACATT 117 Score = 95.1 bits (104), Expect = 2e-14 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | ||| |||| || ||||| | |||||||||||||||||||| ||| Sbjct 987 TCGAAGAAGTTGGTCTTTCCCTGGAGCGAGATCATGTCCATGAAGTCGAAGGGGTTGGTG 928 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | ||| |||||| || |||||| || |||| | || || || || ||||| | Sbjct 927 ACGCCGTAGTGCTTGTCATCGCCAAGCGCGACGAGTAGACGATCGGCGACGAACTCGATG 868 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAAT 251714 || || | ||| || | ||||||||||| || Sbjct 867 TATTGGCACATGAGCTTGGAGTTCATGCCGAT 836 >seq13655 Length=683 Score = 96.9 bits (106), Expect = 7e-15 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | ||| |||| || ||||| | |||||||||||||||||||| ||| Sbjct 163 TCGAAGAAGTTGGTCTTTCCCTGGAGCGAGATCATGTCCATGAAGTCGAAGGGGTTGGTG 104 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | ||| |||||| || |||||| || |||| | || || || || ||||| | Sbjct 103 ACGCCGTAGTGCTTGTCATCGCCAAGCGCGACGAGTAGACGATCGGCGACGAACTCGATG 44 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAAT 251714 || || | ||| || | ||||||||||| || Sbjct 43 TATTGGCACATGAGCTTRGAGTTCATGCCGAT 12 >seq13613 Length=18521 Score = 96.9 bits (106), Expect = 7e-15 Identities = 210/314 (67%), Gaps = 3/314 (1%) Strand=Plus/Plus Query 251845 TGCAGACCCTCGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCA 251904 |||| ||||||||||| |||| |||||| || | |||||| ||||| | |||| Sbjct 17239 TGCATGCCCTCGTCGCGCGATATGAGCTCGTTTGAGAACGTCAGGCCGGGCATGAGCCCA 17298 Query 251905 CGGTTCCTGAGCCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACAC 251964 || ||| ||||||||||||| | | ||| | |||||||| | | ||||| || | Sbjct 17299 CGCTTCTTGAGCCAGAAGATGGAGGCAAAACACCCAGAGAAGAATATGCCCTCCACGGCC 17358 Query 251965 ACCCATGCAACAAGGCGCTCAGCAAAC---GACTTGTCCTGCGACAAGAACTTCTGTGCC 252021 | | || || || |||||||| ||| |||| ||| | || | | | |||| Sbjct 17359 GCAAACGCCACCAGTCGCTCAGCGAACACGGACTGGTCGTCCGCTATCCAACGCAATGCC 17418 Query 252022 CATGCTGCCTTCTTTCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGC 252081 || | |||||||| | ||| || ||||||||||| || ||||| || |||| Sbjct 17419 CAGTCGGCCTTCTTCTTGATACAGGGTATGGTTTCGATTGCGTCGAAGAGGAAGGTCCGT 17478 Query 252082 TCGGCATCGTCCTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGAT 252141 ||| | || ||| | ||| | ||||||||||| ||||||| || | | | Sbjct 17479 TCGTCGGGATCTCTGATATAAGTATCGATGAGGAGAGAGTAGGTCTCCGAGTGAACGTTT 17538 Query 252142 TCGTTGAACATCTG 252155 ||| | | ||||| Sbjct 17539 TCGATCATGATCTG 17552 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027587863387423