Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ganoderma_20boninense_20[genbank_20GCA_5F001855635.1_202016-10-28] 18,903 sequences; 60,325,844 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq10137 131 4e-25 seq6477 123 6e-23 seq5406 95.1 3e-14 seq8926 86.0 1e-11 >seq10137 Length=11321 Score = 131 bits (144), Expect = 4e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || || || | ||||| || || ||||| || || || | | Sbjct 2702 CCACCACGGAGACGGAGCACAAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAATCAGAG 2761 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 |||||||| || || || | || || || |||||||| |||||||| || || Sbjct 2762 AGCGTGCGCCCATCCTCAAGCTGCTTGCCCGCGAAGATGAGACGCTGCTGGTCGGGCGGA 2821 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || |||||||| ||||| ||||| || || || | || ||| || || Sbjct 2822 ATACCCTCCTTGTCCTGGATCTTCGCCTTCACATTGTCGATGGTGTCCGACGACTCGACC 2881 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | |||||||||||||| || || ||||||||||| |||||||| Sbjct 2882 TCCAAGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 2928 >seq6477 Length=89905 Score = 123 bits (136), Expect = 6e-23 Identities = 152/208 (73%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 288266 CGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTA 288325 |||| || | ||||| || || ||||| || ||||||| |||||| || ||||| || | Sbjct 7648 CGAGGTGGAGTGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGCGTACGCCCGTCCTCCA 7589 Query 288326 ATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGA 288385 | || || || ||||||||||| ||||| ||| | || || || || || ||||| | Sbjct 7588 ACTGCTTCCCAGCGAAGATCAGGCGCTGCTGATCAGGCGGAATCCCCTCCTTGTCCTGAA 7529 Query 288386 TTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCC 288445 | || || ||||| || || || | || || || || || |||||||||||||| | Sbjct 7528 TCTTGGCCTTCACATTGTCGATCGTGTCCGAGGACTCAACCTCCAGCGTGATCGTCTTAC 7469 Query 288446 CGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || || ||||| || || || ||||| Sbjct 7468 CCGTGAGGGTCTTCACAAAAATTTGCAT 7441 Score = 118 bits (130), Expect = 3e-21 Identities = 141/191 (74%), Gaps = 8/191 (4%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || || || ||||||| ||| ||||| ||||| || | || || ||| Sbjct 6900 TCCTTCTGAATGTTGTAGTCGGAGAGAGTGCGACCGTCCTCGAG-------CCGGCAAAG 6848 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || |||||||| || | ||||| || || || ||||| |||||||| || ||||| Sbjct 6847 ATAAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGAATTTTCGCCTTGACGTTA 6788 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || |||| ||| ||| || || ||||| ||||| ||||||||| | || ||||||||| Sbjct 6787 TCGATAGTGTCGGACGACTCCACCTCGAGGGTGATAGTCTTCCCG-TGAGGGTCTTGACG 6729 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 6728 AAGATCTGCAT 6718 Score = 114 bits (126), Expect = 3e-20 Identities = 150/208 (72%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 288266 CGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTA 288325 |||| |||| ||| || || ||||| |||||||||| | ||||| || || || | Sbjct 7139 CGAGGTGAAGGGTGGACTCCTTCTGGATGTTATAGTCGGACAAGGTGCGACCATCCTCAA 7080 Query 288326 ATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGA 288385 || || || |||||||| |||||||| || ||||| || || || || || | Sbjct 7079 GCTGCTTCCCGGCGAAGATGAGACGCTGCTGGTCGGGAGGGATCCCCTCCTTGTCTTGAA 7020 Query 288386 TTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCC 288445 | ||||| || ||||| || |||| || || || || ||||| ||||||||||| | Sbjct 7019 TCTTCGCCTTAACGTTGTCGATAGTGTCCGAAGACTCGACCTCGAGAGTGATCGTCTTTC 6960 Query 288446 CGGTCAGAGTCTTGACGAATATCTGCAT 288473 |||||| ||||| ||||| || ||||| Sbjct 6959 CGGTCAACGTCTTCACGAAGATTTGCAT 6932 >seq5406 Length=1760 Score = 95.1 bits (104), Expect = 3e-14 Identities = 119/161 (74%), Gaps = 2/161 (1%) Strand=Plus/Minus Query 326170 GATTTCTTCGTTCTTCGTGATGCTTGCCACGGAT-GCATCGCGGACGTTCAATAGTTTTC 326228 ||| || || |||||| |||| || | | | | || ||||||||||| | ||||||| Sbjct 774 GATCTCCTCATTCTTCATGAT-CTGGTCGTGCTTCGCGTCGCGGACGTTGAGCAGTTTTC 716 Query 326229 CACGAAGAGGGAACACTCCATATCTCTCGCGACCGACCACGGACAGCCCTGCGATTGCAA 326288 | ||||| |||||||| || || | || ||||||||||| |||||| ||||| || | Sbjct 715 CGCGAAGCGGGAACACGCCGTACGTGTCACGACCGACCACACCCAGCCCAGCGATCGCGA 656 Query 326289 GTGTCGCTGCGGAATCCCCCTCCGTCAGAATGAGAGTGCAC 326329 | | | ||||| || ||||| || || ||||| || ||| Sbjct 655 GCGCCTTGGCGGAGTCACCCTCAGTGAGGATGAGCGTACAC 615 >seq8926 Length=6292 Score = 86.0 bits (94), Expect = 1e-11 Identities = 111/152 (73%), Gaps = 6/152 (4%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || ||||| | ||| || || | || |||||||| || |||||||| || || | Sbjct 3929 CCTCCACGGAGCCGAAGCACAAGGTCAAGGGTGCTTTCCTTCTGGATATTGTAATCTGAA 3988 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTG---AGAATCT 288363 ||||| || ||||| || | |||| |||||||||||| || |||||||| || | || Sbjct 3989 AGCGTACGGCCGTCCTCAAGTTGTCGTCCTGCGAAGATGAGCCGCTGTTGCTCAGGAGCT 4048 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTT 288395 || |||||||| |||| | || ||||| Sbjct 4049 ---ATCCCTTCTTTTTCCTCCACCTTGGCTTT 4077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179368693971234