Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ganoderma_20boninense_20[genbank_20GCA_5F001855635.1_202016-10-28] 18,903 sequences; 60,325,844 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq13655 107 4e-18 seq13619 105 1e-17 seq5406 89.7 1e-12 seq13613 87.8 4e-12 >seq13655 Length=683 Score = 107 bits (118), Expect = 4e-18 Identities = 123/166 (74%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 243561 GCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCAT 243620 ||| || ||||||||||| | |||||| | || |||||||| ||||| ||||| || | Sbjct 8 GCTCATCGGCATGAACTCYAAGCTCATGTGCCAATACATCGAGTTCGTCGCCGATCGTCT 67 Query 243621 TTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGA 243680 || |||||||||| |||| || ||| | || |||||||| | ||| ||||| Sbjct 68 ACTCGTCGCGCTTGGCGATGACAAGCACTACGGCGTCACCAACCCCTTCGACTTCATGGA 127 Query 243681 GCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTC 243726 | || ||||| || || || || ||||||||||| ||||| ||| Sbjct 128 CATGATCTCGCTCCAGGGAAAGACCAACTTCTTCGAGAAGCGCGTC 173 >seq13619 Length=8937 Score = 105 bits (116), Expect = 1e-17 Identities = 123/166 (74%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 243561 GCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCAT 243620 ||| || ||||||||||| | |||||| | || |||||||| ||||| ||||| || | Sbjct 832 GCTCATCGGCATGAACTCCAAGCTCATGTGCCAATACATCGAGTTCGTCGCCGATCGTCT 891 Query 243621 TTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGA 243680 || |||||||||| |||| || ||| | || |||||||| | ||| ||||| Sbjct 892 ACTCGTCGCGCTTGGCGATGACAAGCACTACGGCGTCACCAACCCCTTCGACTTCATGGA 951 Query 243681 GCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTC 243726 | || ||||| || || || || ||||||||||| ||||| ||| Sbjct 952 CATGATCTCGCTCCAGGGAAAGACCAACTTCTTCGAGAAGCGCGTC 997 >seq5406 Length=1760 Score = 89.7 bits (98), Expect = 1e-12 Identities = 118/161 (73%), Gaps = 2/161 (1%) Strand=Plus/Minus Query 298291 GATTTCTTCGTTCTTCGTGATGCTTGCCACGGAT-GCATCGCGGACATTCAATAGTTTTC 298349 ||| || || |||||| |||| || | | | | || |||||||| || | ||||||| Sbjct 774 GATCTCCTCATTCTTCATGAT-CTGGTCGTGCTTCGCGTCGCGGACGTTGAGCAGTTTTC 716 Query 298350 CACGAAGAGGGAACACTCCATATCTCTCGCGACCGACCACGGACAGCCCTGCGATTGCAA 298409 | ||||| |||||||| || || | || ||||||||||| |||||| ||||| || | Sbjct 715 CGCGAAGCGGGAACACGCCGTACGTGTCACGACCGACCACACCCAGCCCAGCGATCGCGA 656 Query 298410 GTGTCGCTGCGGAATCCCCCTCCGTCAGAATGAGAGTGCAC 298450 | | | ||||| || ||||| || || ||||| || ||| Sbjct 655 GCGCCTTGGCGGAGTCACCCTCAGTGAGGATGAGCGTACAC 615 >seq13613 Length=18521 Score = 87.8 bits (96), Expect = 4e-12 Identities = 107/145 (74%), Gaps = 1/145 (1%) Strand=Plus/Minus Query 243582 ACTC-ATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATG 243640 |||| ||| | || |||||||| || ||||| ||| | | | | || || || ||| Sbjct 17038 ACTCGATGTGCCAATACATCGAGTTTGTAGCGGACAGGCTGCTTGTTGCTCTCGGAAATG 16979 Query 243641 AGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGA 243700 |||| |||||||| || ||||| |||| ||| ||||| | ||||||||| | |||| Sbjct 16978 AGAAGCACTACAACTCAAATAACCCGTTTGACTTCATGGACATGATTTCGCTTGAGGGGA 16919 Query 243701 AAACTAACTTCTTCGAAAAGCGTGT 243725 | || ||||||||||| || || || Sbjct 16918 AGACCAACTTCTTCGAGAAACGGGT 16894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102612888323050