Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ganoderma_20boninense_20[genbank_20GCA_5F001855635.1_202016-10-28] 18,903 sequences; 60,325,844 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq17681 152 4e-32 seq1042 84.2 2e-11 >seq17681 Length=5155 Score = 152 bits (168), Expect = 4e-32 Identities = 221/307 (72%), Gaps = 10/307 (3%) Strand=Plus/Minus Query 30045 GGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGAT---GAGG-T 30100 ||||||||| || | | ||||||||| | |||| |||| || | |||| | || | Sbjct 3355 GGGGTTCCAAGCACTGAGGATGATGCGACGGTCTGTGGGGTCGTGCTTGATCTTGCGGAT 3296 Query 30101 CCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCC-CTCATGTCCGTG 30159 ||| | || |||||||| || ||| | || ||||||||||| | || |||| | Sbjct 3295 GCACTCC----TGAAGCTGATCGACGCCCTTTCCAGAGTAGTCTGCGTCGCA-GTCCTCG 3241 Query 30160 TACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCC 30219 |||| |||||||||||| | ||| ||||| ||||| || || || ||||| || || Sbjct 3240 TACTTTGCTCCGAAATGGCGCCATTGGAAACCGTAGACGGGGCCAAGGTCACCTTCGCGT 3181 Query 30220 CTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTT 30279 | || ||| ||| | ||| || | || || |||| |||||| ||||||||||||| Sbjct 3180 CGATGACCGAGGCCGCGCTTCTCGAGGAACTCCTTGGAGCCGTTGCCGTCCCAGATCTTG 3121 Query 30280 ACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCC 30339 | ||||| |||||||| ||||||| |||||| || | | ||||| || |||||| Sbjct 3120 ATGCCCTTTTCGGAGAGGAGCTTGGAGTCTGTGGAACCGCGTATAAACCAGAGAAGCTCC 3061 Query 30340 TCCACGA 30346 || |||| Sbjct 3060 TCGACGA 3054 >seq1042 Length=16560 Score = 84.2 bits (92), Expect = 2e-11 Identities = 108/144 (75%), Gaps = 4/144 (3%) Strand=Plus/Plus Query 52051 AGATGGGCGACAAGTTTGCGTCGT-TCACGGCGCAAAAGGGGACGTGCGGAGCCGTCCTG 52109 |||| ||||||||||| || ||| ||||||| || ||||| ||| ||| | ||| Sbjct 4738 AGATCGGCGACAAGTTCGCATCGCGTCACGGC-CAGAAGGGTACGATCGGTATCA-CCTA 4795 Query 52110 AC-CCAGGAGGACATGCCCTTCGACAAGGACGGGGTGGTGCCCGACCTCATCATCAACCC 52168 | ||||||||||||||| ||| ||| || | |||||| ||||||||||||| Sbjct 4796 CCGCCAGGAGGACATGCCGTTCACGGCGGAGGGTATCACCCCCGACATCATCATCAACCC 4855 Query 52169 CCACGCCTTTCCATCCAGGATGAC 52192 ||||||| ||||||| | ||||| Sbjct 4856 CCACGCCATTCCATCTCGTATGAC 4879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408523462549619