Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ganoderma_20boninense_20[genbank_20GCA_5F001855635.1_202016-10-28] 18,903 sequences; 60,325,844 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq10137 111 1e-19 seq6477 87.8 1e-12 >seq10137 Length=11321 Score = 111 bits (122), Expect = 1e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 ||||| |||||||| |||||| || || || || || ||||| || || |||| || Sbjct 3296 ACCAAGGGGAGAGTGGACTCCTTCTGGATATTGTAGTCCGAAAGAGTACGGCCGTCCTCC 3355 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 || || ||||||||||| || | |||||| ||||| || || | ||||||||||| | Sbjct 3356 AGCTGCTTACCGGCAAAGATAAGACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGG 3415 Query 34618 ATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTT 34676 ||| || | || ||| | || ||||| | |||||| || | ||| || || || Sbjct 3416 ATC-TTCGCCTTGACGTTGTCGATGGTGTCGGAGGACTCCACCTCGAGGGTGATGGTCTT 3474 Query 34677 ACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| || || ||||| || |||||||| Sbjct 3475 GCCGGTCAAGGTCTTCACGAAGATCTGCAT 3504 Score = 104 bits (114), Expect = 1e-17 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||| | ||||| ||||||||||| || ||||| ||||| || || || ||| Sbjct 2711 AGACGGAGCACAAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAATCAGAGAGCGTGCGC 2770 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || ||||| || || || || || || | |||||| ||||| ||||| | |||||| Sbjct 2771 CCATCCTCAAGCTGCTTGCCCGCGAAGATGAGACGCTGCTGGTCGGGCGGAATACCCTCC 2830 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||||| | || || | || ||||| ||| || |||| ||| Sbjct 2831 TTGTCCTGGATCTTC-GCCTTCACATTGTCGATGGTGTCCGACGACTCGACCTCCAAGGT 2889 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| || || || | || || || ||||||||||| Sbjct 2890 GATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 2928 Score = 89.7 bits (98), Expect = 3e-13 Identities = 151/214 (71%), Gaps = 6/214 (3%) Strand=Plus/Plus Query 34498 ACCAA-ATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTC 34556 ||||| ||| || ||||||||||| |||||||| || || || || || || | || || Sbjct 3006 ACCAAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGACCATCCTC 3065 Query 34557 AAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGT 34616 || || ||||| || || || || ||||| ||||| || || | ||||||||||| | Sbjct 3066 GAGCTGCTTACCAGCGAAGATCAAGCGCTGCTGGTCAGGGGGGATACCCTCCTTGTC-CT 3124 Query 34617 GATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTA---TCG 34672 || || | || ||| | || ||||| |||||| || | ||| | || Sbjct 3125 GAATCTTCGCCTTGACGTTGTCGATCGTGTCCGAAGACTCCACCTCGAGGGTGATAGTCT 3184 Query 34673 TTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | ||||| || ||||| || ||||| |||||||| Sbjct 3185 TCTTACCCGTCAACGTCTTGACAAAGATCTGCAT 3218 >seq6477 Length=89905 Score = 87.8 bits (96), Expect = 1e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 ||||| ||||||||||| || ||||| || || || || || ||| |||| || | || Sbjct 7643 TGGAGTGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGCGTACGCCCGTCCTCCAACTGC 7584 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623 || || || || || | ||||| || || ||||| | ||||||||||| ||| || Sbjct 7583 TTCCCAGCGAAGATCAGGCGCTGCTGATCAGGCGGAATCCCCTCCTTGTC-CTGAATCTT 7525 Query 34624 TGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682 | || || | || ||||| | ||| || |||| || ||||| ||||| || Sbjct 7524 GGCCTTCACATTGTCGATCGTGTCCGAGGACTCAACCTCCAGCGTGATCGTCTTACCCGT 7465 Query 34683 TAACGTTTTCACAAAAATCTGCATG 34707 | || ||||||||||| |||||| Sbjct 7464 GAGGGTCTTCACAAAAATTTGCATG 7440 Score = 86.0 bits (94), Expect = 4e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 || || ||| |||||| || |||||||| || || | || || | || ||||| || Sbjct 7134 TGAAGGGTGGACTCCTTCTGGATGTTATAGTCGGACAAGGTGCGACCATCCTCAAGCTGC 7075 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623 || ||||| || || | |||||| ||||| || || | |||||||||||| ||| || Sbjct 7074 TTCCCGGCGAAGATGAGACGCTGCTGGTCGGGAGGGATCCCCTCCTTGTCT-TGAATCTT 7016 Query 34624 TGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682 | |||||| | || ||||| ||| || || | || ||||| || ||||| Sbjct 7015 CGCCTTAACGTTGTCGATAGTGTCCGAAGACTCGACCTCGAGAGTGATCGTCTTTCCGGT 6956 Query 34683 TAACGTTTTCACAAAAATCTGCAT 34706 ||||| ||||| || || ||||| Sbjct 6955 CAACGTCTTCACGAAGATTTGCAT 6932 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314657092496399