Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ganoderma_20boninense_20[genbank_20GCA_5F001855635.1_202016-10-28] 18,903 sequences; 60,325,844 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq6477 95.1 8e-15 seq10137 93.3 3e-14 >seq6477 Length=89905 Score = 95.1 bits (104), Expect = 8e-15 Identities = 142/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||| || || ||||||||||| || |||||||| || || ||||| ||| || Sbjct 7441 ATGCAAATTTTTGTGAAGACCCTCACGGGTAAGACGATCACGCTGGAGGTTGAGTCCTCG 7500 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || ||| ||||| || || | ||||| ||||| Sbjct 7501 GACACGATCGACAATGTGAAGGC-CAAGATTCAGGACAAGGAGGGGATTCCGCCTGATCA 7559 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| | || || || || || || |||| |||| || || | ||| ||||| Sbjct 7560 GCAGCGCCTGATCTTCGCTGGGAAGCAGTTGGAGGACGGGCGTACGCTCTCCGACTACAA 7619 Query 23790 CATACAAAAAGAGTCCACA 23808 ||| || || ||| |||| Sbjct 7620 CATCCAGAAGGAGAGCACA 7638 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| || || | || ||||| |||||||||||||| || || || || Sbjct 6932 ATGCAAATCTTCGTGAAGACGTTGACCGGAAAGACGATCACTCTCGAGGTCGAGTCTTCG 6991 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| | || || |||| | || ||| ||||| || || | || || || || Sbjct 6992 GACACTATCGACAACGTTAAGGC-GAAGATTCAAGACAAGGAGGGGATCCCTCCCGACCA 7050 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || ||||| || || || || || | ||||| || ||| || || Sbjct 7051 GCAGCGTCTCATCTTCGCCGGGAAGCAGCTTGAGGATGGTCGCACCTTGTCCGACTATAA 7110 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 7111 CATCCAGAAGGAGTCCAC 7128 Score = 87.8 bits (96), Expect = 1e-12 Identities = 135/192 (70%), Gaps = 8/192 (4%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||||||||| || || ||||| ||||| || || || | Sbjct 6718 ATGCAGATCTTCGTCAAGACCCTCACGGG-AAGACTATCACCCTCGAGGTGGAGTCGTCC 6776 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| | || | | || |||||| ||||| || || | ||||| || || Sbjct 6777 GACACTATCGATAACGTCAAGGCGAAAATTCAGGACAAGGAGGGCATCCCGCCTGACCAG 6836 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || |||||||| || || |||| |||||| | ||| |||||| Sbjct 6837 CAGCGTCTTATCTTTGCCGG-------CTCGAGGACGGTCGCACTCTCTCCGACTACAAC 6889 Query 23791 ATACAAAAAGAG 23802 || || || ||| Sbjct 6890 ATTCAGAAGGAG 6901 >seq10137 Length=11321 Score = 93.3 bits (102), Expect = 3e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || ||||||||||| || |||||||| | || || || || || Sbjct 2928 ATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCTTGGAGGTCGAGTCGTCG 2869 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || || ||||| || ||| | ||||| || || Sbjct 2868 GACACCATCGACAATGTGAAGGC-GAAGATCCAGGACAAGGAGGGTATTCCGCCCGACCA 2810 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || || ||||| || || || || | ||||| | |||||||| Sbjct 2809 GCAGCGTCTCATCTTCGCGGGCAAGCAGCTTGAGGATGGGCGCACGCTCTCTGATTACAA 2750 Query 23790 CATACAAAAAGAG 23802 ||| || || ||| Sbjct 2749 CATCCAGAAGGAG 2737 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337931729242724