Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ganoderma_20boninense_20[genbank_20GCA_5F001855635.1_202016-10-28] 18,903 sequences; 60,325,844 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq13613 170 3e-37 seq13619 125 1e-23 >seq13613 Length=18521 Score = 170 bits (188), Expect = 3e-37 Identities = 260/368 (71%), Gaps = 3/368 (1%) Strand=Plus/Plus Query 48183 TCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCG 48242 ||||| || || || || |||||||| || ||||| || |||||||| || || | || Sbjct 17266 TCGTTTGAGAACGTCAGGCCGGGCATGAGCCCACGCTTCTTGAGCCAGAAGATGGAGGCA 17325 Query 48243 AAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTA- 48301 ||| | ||||| ||||||||||| || ||||||||||| || |||| ||| || | Sbjct 17326 AAACACCCAGAGAAGAATATGCCCTCCACGGCCGCAAACGCCACCAGTCGCTCAGCGAAC 17385 Query 48302 ACTGGCT--TCGTTGTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGC 48359 || | || |||| |||||| || |||||| || ||||||||||| | ||| || Sbjct 17386 ACGGACTGGTCGTCCGCTATCCAACGCAATGCCCAGTCGGCCTTCTTCTTGATACAGGGT 17445 Query 48360 ATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCT 48419 || ||||| || || | ||||| ||| | ||| | | |||| | | |||||||| Sbjct 17446 ATGGTTTCGATTGCGTCGAAGAGGAAGGTCCGTTCGTCGGGATCTCTGATATAAGTATCG 17505 Query 48420 ATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAA 48479 || | ||| || | || ||||||| ||||| || |||||||| |||||||| Sbjct 17506 ATGAGGAGAGAGTAGGTCTCCGAGTGAACGTTTTCGATCATGATCTGAAAGCCGTAAAAG 17565 Query 48480 CATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACT 48539 |||| || || | | ||| ||||| || |||| || || ||| |||||| || || Sbjct 17566 CATCGTGCCTCAGCGGCCTGGACCTCGTTAGAAAACCGCTCGACCAGATTCTCGTTGACA 17625 Query 48540 ATTCCATC 48547 || || || Sbjct 17626 ATGCCGTC 17633 >seq13619 Length=8937 Score = 125 bits (138), Expect = 1e-23 Identities = 342/518 (66%), Gaps = 12/518 (2%) Strand=Plus/Minus Query 48183 TCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCG 48242 ||||| || || |||||||||||||| | || || || |||||||| || |||| ||| Sbjct 623 TCGTTCGAGAACGTGAGACCGGGCATCAAGCCGCGCTTCTTGAGCCAGAAGATTGACGCA 564 Query 48243 AAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAA 48302 || || ||||| ||||| || || || || || || || ||| ||| | ||| || || Sbjct 563 AAGGACCCAGAGAAGAAGATACCCTCGACCGCGGCGAAGGCGACAAGGCGCTCCGCGAAA 504 Query 48303 CT-GGCTTCGT-TGTG-TATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGC 48359 | | || ||| | | ||||| || ||||||| || ||||||||||| | || || Sbjct 503 GTAGACTCCGTATCCGAGATCCAGCGGAGTGCCCAGTCGGCCTTCTTCTTGATGCAGGGG 444 Query 48360 ATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCT 48419 || ||||| || |||| ||||| | | ||| ||||| | ||| || || Sbjct 443 ATGGTTTCAATTGCATCGAAGAGGTGCTCACGCTGCTTGGGGTCTTTGATGTAGGTGTCG 384 Query 48420 ATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAA 48479 || | || || |||||||||| || || || || ||||| || ||||| || Sbjct 383 ATGAGGAGGGAGTAGGTTTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAG 324 Query 48480 CATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACT 48539 || | || || | | ||| ||||| | | || ||||| | | ||||| || || Sbjct 323 CAGCGGGCCTCAGCGGCCTGGACCTCGTTGGAGAAACGTTCGACGAGGTTCTCGTTCACA 264 Query 48540 ATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAA------ATATTTTTCG 48593 || ||||| || || || || || | ||||| || || | | ||| Sbjct 263 ATACCATCTGAGGCGGCGAAGAAGGCGAGGACATGAGAGATGAAGTGGCGCTCATCGTCG 204 Query 48594 TTGGAAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTC 48653 ||| || | | || | ||| || | || ||| || || | ||| | || || || ||| Sbjct 203 TTG--AGAC-GGTTGTGCCAATCGTGGAGATCCTTGGAAAGATCCATCTCCTCCGCGGTC 147 Query 48654 CAAAATGATGCCTCTGCTTTTTTATACATATTCCATAT 48691 ||||| || ||||| || || || ||||| | ||| || Sbjct 146 CAAAAGGAAGCCTCGGCCTTCTTGTACATTTGCCAAAT 109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694504658445920