Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ganoderma_20sp._2010597_20SS1_20[JGI_20Gansp1_202011-03-16] 156 sequences; 39,522,573 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq2 150 2e-31 >seq2 Length=3722621 Score = 150 bits (166), Expect = 2e-31 Identities = 360/539 (67%), Gaps = 9/539 (2%) Strand=Plus/Plus Query 16985 CCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTC 17044 |||||||| | ||| || ||||| || || || | ||||||||| || || ||| Sbjct 2460762 CCCTCGTCGCGCGAGATGAGCTCGTTCGAGAAAGTGAGACCGGGCATCAAGCCGCGCTTC 2460821 Query 17045 TTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAAC 17104 || | ||| || || | ||||| || ||||| ||||| ||||||||||| | || || Sbjct 2460822 TTGAGCCAGAAGATAGACGCGAAGGAACCAGAGAAGAAGATACCCTCGACAGCAGCGAAG 2460881 Query 17105 GCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACTCG 17164 |||| | ||||| ||| | | | | |||| | ||||| | |||| ||| Sbjct 2460882 GCGACAAGGCGTTCCGCGAAAGCGGAATTCTTGTCAGAGATCCAGCGGAGGGCCCAGTCG 2460941 Query 17165 GCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATAATTTCTCTTTTT-CCTG 17223 || || | ||| |||||| ||||| || ||||| | ||| | | ||| | |||| Sbjct 2460942 GCCTTCTTCTTGATGCAAGGGATCGTCTCGATGGCGTCAAAGAGGTACTCACGCTGCCTG 2461001 Query 17224 TAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCAT 17283 |||| | || || ||||||||||| ||| ||| | ||||| || ||||||||||| Sbjct 2461002 G-GGTCCTTGATGTAGGTATCGATGAGGAGGGAGTAGGTCTCGGAATGGATGTTCTCCAT 2461060 Query 17284 GGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCG 17343 || || || ||||| || || ||||| || || || || || | |||| || Sbjct 2461061 CATGATTTGGAAGCCGTAGAAACAGCGGGCCTCGGCGGCCTGGACCTCGTTGGAGAAACG 2461120 Query 17344 TTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTT 17403 || | || || ||||| ||||||||||| |||||||| || || | | ||| Sbjct 2461121 CTCGACAAGGTTCTCGTTGACGATGCCGTCCGAGGCGGCGAAGAAGGCAAGGACATGGGA 2461180 Query 17404 AATGAAATATTTTTCGTCCGGTGTAAGAAC-----GCGCCAGTCCTTTAAATCTTTGGAT 17458 | ||||| || | || ||| || | | |||||| | | ||| ||||| Sbjct 2461181 GACGAAATGGCGCTCAT-CGTTGT-TGAGCCTGTTGTTCCAGTCATGGAGATCCTTGGAA 2461238 Query 17459 ATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAAAT 17517 | ||||| || || | ||||| ||| |||| ||||||| || ||||| | ||| || Sbjct 2461239 AGATCCATCTCCTCAGCAGTCCAGAAAGAAGCCTCTGCCTTCTTGTACATTTGCCAGAT 2461297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517544590786080