Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ganoderma_20sp._2010597_20SS1_20[JGI_20Gansp1_202011-03-16] 156 sequences; 39,522,573 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq2 356 2e-93 seq1 147 2e-30 seq3 136 4e-27 seq6 100 3e-16 >seq2 Length=3722621 Score = 356 bits (394), Expect = 2e-93 Identities = 470/646 (73%), Gaps = 17/646 (3%) Strand=Plus/Minus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||| ||||| || |||||||| | |||||| |||| || Sbjct 2461297 ATCTGGCAAATGTACAAGAAGGCAGAGGCTTCTTTCTGGACTGCTGAGGAGATGGATCTT 2461238 Query 116696 TCCAAGGA-CACGAGCGACTGGGAGCGCTTGAACGACAACGA---GCGCCATTTCATCAA 116751 |||||||| | | | |||||| | | | | ||||||| |||||||||| || Sbjct 2461237 TCCAAGGATCTCCAT-GACTGGAACAACAGGCTCAACAACGATGAGCGCCATTTCGTCTC 2461179 Query 116752 GCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG 116811 || || || ||||| ||||||||| |||||||||||||||||||| || |||||||| Sbjct 2461178 CCATGTCCTTGCCTTCTTCGCCGCCTCGGACGGCATCGTCAACGAGAACCTTGTCGAGCG 2461119 Query 116812 TTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871 |||| | | ||||| |||| |||||||| || || ||||||||||| || ||| || Sbjct 2461118 TTTCTCCAACGAGGTCCAGGCCGCCGAGGCCCGCTGTTTCTACGGCTTCCAAATCATGAT 2461059 Query 116872 GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT---GCGCTCTTC 116928 ||||||| | || || || | || || ||||||||| || ||| | | | | Sbjct 2461058 GGAGAACATCCATTCCGAGACCTACTCCCTCCTCATCGATACCTACATCAAGGACCCCAG 2460999 Query 116929 GGAG---GAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAA 116985 | || ||| | ||| |||| |||||||||||||||| || ||| |||| |||| Sbjct 2460998 GCAGCGTGAGTACCTC--TTTG----ACGCCATCGAGACGATCCCTTGCATCAAGAAGAA 2460945 Query 116986 GGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGT 117045 |||||| ||||| || ||||||||| | | || | |||| |||| || ||||| || Sbjct 2460944 GGCCGACTGGGCCCTCCGCTGGATCTCTGACAAGAATTCCGCTTTCGCGGAACGCCTTGT 2460885 Query 117046 GGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCT 117105 |||||||| || |||||||| ||||||| || || ||||| | || || ||||| Sbjct 2460884 CGCCTTCGCTGCTGTCGAGGGTATCTTCTTCTCTGGTTCCTTCGCGTCTATCTTCTGGCT 2460825 Query 117106 CAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGA 117165 |||||| |||||| | |||||||| || |||||| |||||||||||||| | ||||| Sbjct 2460824 CAAGAAGCGCGGCTTGATGCCCGGTCTCACTTTCTCGAACGAGCTCATCTCGCGCGACGA 2460765 Query 117166 GGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGC 117225 |||| |||| ||||||||| || ||||| |||| ||| | | | ||| | | Sbjct 2460764 GGGTATGCACACCGACTTTGCGTGCTTGCTCTTCAGTCATCTCAAGAGAAGGCCGCACCC 2460705 Query 117226 GGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAG 117271 | ||| || |||| |||| || || ||||| ||||||||| Sbjct 2460704 CGAAGTCGTTAGCAAGATTATCACGGAGGCTGTCGCGATCGAGCAG 2460659 Score = 300 bits (332), Expect = 2e-76 Identities = 413/575 (72%), Gaps = 7/575 (1%) Strand=Plus/Plus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| || | ||||| |||||||| ||||| ||| | ||||| Sbjct 2462673 ATATGGCAAATGTACAAGCGAGCACAAGCGTCCTTCTGGACGGTCGAAGAGATCGACCTC 2462732 Query 116696 TCCAAGGACACGAGCGACTGGGAGCGCTTGAAC---GACAACGAGCGCCATTTCATCAAG 116752 || | || | ||||||| | | | | || | |||||| || ||| || Sbjct 2462733 TCGCATGATATTCCCGACTGGAATGGGAAGCTCACAGATAGCGAGCGTCACTTCCTCTCC 2462792 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 |||| ||||||||||| || ||| ||||| |||||||||||||| || |||||||| Sbjct 2462793 TACGTCCTGGCCTTTTTTGCGGCCTCGGACGGTATCGTCAACGAGAACCTCGTCGAGCGG 2462852 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 || || | ||||| |||| ||||||||||| |||||||| ||||| |||||| || Sbjct 2462853 TTTTCTAACGAGGTTCAGGCCGCCGAGGCGCGATGCTTCTATGGCTTCCAGATCATGATC 2462912 Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAG 116932 || ||||| ||||| || | || || ||||| ||||| ||| | | | || Sbjct 2462913 GAAAACGTCCACTCCGAGACCTACTCCCTTCTCATTGACACTTACATCAGGGACCCAGAC 2462972 Query 116933 GAGAAGCTCCGTT--TGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCG 116990 |||| | |||| | || ||||||||||||| || || ||| |||| ||||||||| Sbjct 2462973 GAGAGGA--CGTTCCTCTTCGACGCCATCGAGACTATACCCTGCATCAAGAAGAAGGCCG 2463030 Query 116991 AGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCT 117050 | ||||| | |||||||| || | || ||| |||| ||||| ||||| |||| Sbjct 2463031 ATTGGGCATTACGCTGGATAGCTGATGACCAGTCCGTGTTCGCTGAGCGGCTGGTCGCCT 2463090 Query 117051 TCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGA 117110 |||| || || |||||| | ||||| || || |||| ||| | || || |||||||||| Sbjct 2463091 TCGCCGCTGTAGAGGGCATATTCTTCTCCGGGTGTTTTGCCTCAATCTTCTGGCTCAAGA 2463150 Query 117111 AACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTC 117170 | || || || ||||||||| |||| ||| |||||||||||||| | || ||||| Sbjct 2463151 AGCGTGGGCTGATGCCCGGCTTGACGTTCTCGAACGAGCTCATCTCGCGTGATGAGGGCA 2463210 Query 117171 TGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCAT 117205 |||| |||||| || ||| | |||||| ||||| Sbjct 2463211 TGCACACCGACTTCGCTTGTCTCCTGTTCCAGCAT 2463245 >seq1 Length=4606855 Score = 147 bits (162), Expect = 2e-30 Identities = 155/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || ||||||||||| || ||||| | || ||||| | || Sbjct 1903533 ATGCAAATCTTTGTCAAGACCCTCACGGGCAAGACTATCACTCTTGAGGTCGAGTCGTCC 1903592 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | |||| || |||| ||||||||||||||||| | |||||| Sbjct 1903593 GACACCATCGATAATGTTAAGGCGAAGATTCAGGACAAAGAGGGCATCCCGCCTGACCAG 1903652 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| || |||| ||| ||||| ||||| || |||| || ||||| ||||||||| Sbjct 1903653 CAACGTCTGATCTTCGCCGGCAAGCAGCTTGAGGACGGTCGTACCCTTTCCGACTACAAT 1903712 Query 40870 ATCCAGAAGGAGGCCACGCTGCAT 40893 |||||||||||| | ||||| ||| Sbjct 1903713 ATCCAGAAGGAGTCAACGCTTCAT 1903736 Score = 136 bits (150), Expect = 4e-27 Identities = 156/207 (75%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||||||||| || ||||| | || ||||| || | Sbjct 1904267 ATGCAGATTTTCGTCAAGACCCTCACGGGCAAGACGATCACGCTGGAGGTCGAGTCCTCG 1904326 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | |||| || |||| ||||| ||||| || || | ||||| Sbjct 1904327 GACACGATCGACAACG-TGAAGGCGAAGATTCAGGACAAGGAGGGTATTCCGCCTGACCA 1904385 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||||| |||||| || ||| |||| |||| ||||| ||| |||||||| Sbjct 1904386 GCAGCGCCTCATCTTCGCGGGGAAGCAGTTGGAGGACGGCCGCACGCTCTCTGACTACAA 1904445 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCT 40895 ||||||||||||| |||||| || || Sbjct 1904446 CATCCAGAAGGAGAGCACGCTCCACCT 1904472 Score = 127 bits (140), Expect = 2e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || ||||| || ||||| || ||||| || ||||| | || ||||| | | Sbjct 1904038 AATGCAGATTTTCGTGAAGACGCTTACTGGCAAGACGATCACGCTGGAGGTCGAGTCTTC 1904097 Query 40749 CGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 || | | | | |||| | |||| || |||| ||||| ||||||||||| | |||| Sbjct 1904098 TGATACCATCGACAACG-TGAAGGCGAAGATTCAGGACAAGGAGGGCATCCCACCTGACC 1904156 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 ||||||| || |||| ||| ||||| ||||| || || | || || ||| || |||| Sbjct 1904157 AGCAACGTCTGATCTTCGCTGGCAAGCAGCTCGAGGATGGTCGTACTCTCTCGGATTACA 1904216 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||| |||||| | || || || || || ||||| || |||| || Sbjct 1904217 ACATCCAAAAGGAGTCGACACTTCACCTTGTCTTGCGTCTGCGGGGAGG 1904265 Score = 91.5 bits (100), Expect = 2e-13 Identities = 146/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || ||| | || || || || ||||| |||| ||||| | | Sbjct 1903761 ATGCAAATTTTCGTGAAGACGTTGACAGGAAAGACTATCACTCTCGAGGTCGAGTCTTCG 1903820 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | |||| ||| || | ||||| || || ||||| | || || Sbjct 1903821 GACACGATCGACAACGTT-AAGGCAAAGATCCAAGACAAGGAAGGGATCCCTCCTGATCA 1903879 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||| | || || || ||||| || || | ||||| | ||| || || Sbjct 1903880 GCAGCGCCTCATTTTTGCTGGGAAGCAGCTTGAGGATGGTCGCACGTTGTCCGATTATAA 1903939 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCT 40895 ||||||||||||| |||||| || || Sbjct 1903940 CATCCAGAAGGAGAGCACGCTCCACCT 1903966 >seq3 Length=3223173 Score = 136 bits (150), Expect = 4e-27 Identities = 156/207 (75%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || ||||| ||||||||| |||| ||||| || || Sbjct 2802473 ATGCAGATCTTCGTGAAGACCTTGACCGGCAAGACCATCACCCTCGAAGTCGAGTCCTCC 2802414 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| || || | || || ||||||||||| | ||||| Sbjct 2802413 GACACCATCGACAACG-TGAAGGCGAAGATCCAAGATAAGGAGGGCATCCCGCCCGACCA 2802355 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| || || |||||||| |||| || || || ||||||||| Sbjct 2802354 GCAGCGTCTTATCTTCGCCGGGAAGCAGCTGGAGGACGGCCGTACTCTTTCCGACTACAA 2802295 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCT 40895 ||| ||||||||| ||||||| || || Sbjct 2802294 CATTCAGAAGGAGTCCACGCTCCACCT 2802268 Score = 132 bits (146), Expect = 5e-26 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| |||||||| ||||| |||||||| || ||||| |||| || || | || Sbjct 2802192 ATGCAAATCTTCGTAAAGACGCTGACGGGCAAGACGATCACTCTCGAGGTGGAGTCTTCC 2802133 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| || || | || || ||||||||||| | |||||| Sbjct 2802132 GACACCATCGACAATGTCAAGGCGAAGATCCAGGATAAGGAGGGCATCCCTCCTGACCAG 2802073 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || | |||| |||||||| ||| |||| |||| |||||||| ||||||||| Sbjct 2802072 CAGCGCTTGATCTTTGCGGGCAAGCAGTTGGAGGACGGTCGCACCCTGTCTGACTACAAC 2802013 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCT 40895 || ||||||||| ||| || || || Sbjct 2802012 ATTCAGAAGGAGAGCACCCTTCACCT 2801987 Score = 129 bits (142), Expect = 6e-25 Identities = 156/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||||||||||| || ||||||||| | || || || | | Sbjct 2801909 ATGCAGATCTTCGTCAAGACGCTCACGGGGAAGACCATCACCTTGGAGGTTGAGTCGTCG 2801850 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | |||| || || | ||||| ||||| || || | ||||| Sbjct 2801849 GACACGATCGACAACG-TGAAGGCGAAGATCCAGGACAAGGAGGGTATTCCGCCAGACCA 2801791 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||||| ||| ||||| ||||| || || | |||||| ||| |||||||| Sbjct 2801790 GCAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGATGGGCGCACGCTCTCGGACTACAA 2801731 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||||| ||| || || || || Sbjct 2801730 CATCCAGAAGGAGAGCACCCTCCACCTTGT 2801701 Score = 87.8 bits (96), Expect = 2e-12 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 40793 GCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCA 40852 ||||||| | |||||||| || ||||||| || ||||| ||||| || |||| ||||| Sbjct 2802649 GCATCCCTCCCGACCAGCAGCGTCTCATCTTTGCCGGCAAGCAGCTCGAGGACGGGCGCA 2802590 Query 40853 CCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCT 40895 | || ||| |||||||||||||||||| | || || || || Sbjct 2802589 CTCTTTCCGATTACAACATCCAGAAGGAGTCGACCCTTCACCT 2802547 >seq6 Length=2725691 Score = 100 bits (110), Expect = 3e-16 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 40793 GCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCA 40852 |||||||| | |||||||| || || |||| |||||||| ||||| || || | |||| Sbjct 356739 GCATCCCCCCCGACCAGCAGCGCCTGATCTTTGCGGGCAAGCAGCTCGAGGATGGCCGCA 356680 Query 40853 CCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905 | || | |||||||||||||||||||||| |||| || || || ||| | ||| Sbjct 356679 CGCTTAGCGACTACAACATCCAGAAGGAGTCCACCCTCCACCTGGTGCTTCGC 356627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515218195322560