Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ganoderma_20sp._2010597_20SS1_20[JGI_20Gansp1_202011-03-16] 156 sequences; 39,522,573 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq3 125 8e-24 seq1 111 2e-19 >seq3 Length=3223173 Score = 125 bits (138), Expect = 8e-24 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 42987 GTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCA 43046 ||||||||||| ||||| ||||| |||| ||| || || |||| || | |||||| || Sbjct 2801996 GTGCTCTCCTTCTGAATGTTGTAGTCAGACAGGGTGCGACCGTCCTCCAACTGCTTGCCC 2802055 Query 43047 GCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTG 43106 || || || | ||||||||||| | || | || |||||| ||| ||| || ||| Sbjct 2802056 GCAAAGATCAAGCGCTGCTGGTCAGGAGGGATGCCCTCCTTATCCTGGATCTTCGCCTTG 2802115 Query 43107 AGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTC 43166 | | | | |||||| || ||||| |||| ||||| || |||||||| |||||| Sbjct 2802116 ACATTGTCGATGGTGTCGGAAGACTCCACCTCGAGAGTGATCGTCTTGCCCGTCAGCGTC 2802175 Query 43167 TTTACAAAGATTTGCAT 43183 ||||| ||||||||||| Sbjct 2802176 TTTACGAAGATTTGCAT 2802192 Score = 120 bits (132), Expect = 3e-22 Identities = 147/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 42987 GTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCA 43046 ||||||||||| || || ||||| || | || || ||| | || || |||||||| || Sbjct 2801713 GTGCTCTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGCCCATCCTCGAGCTGCTTGCCG 2801772 Query 43047 GCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTG 43106 ||||| ||||| ||||||||||| | ||| | | |||||||||| ||| || || Sbjct 2801773 GCGAAGATGAGACGCTGCTGGTCTGGCGGAATACCCTCCTTGTCCTGGATCTTCGCCTTC 2801832 Query 43107 AGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGT 43165 | ||| | | | |||||| ||| || || || | |||||||| || ||||| ||||| Sbjct 2801833 A-CGTTGTCGATCGTGTCCGACGACTCAACCTCCAAGGTGATGGTCTTCCCCGTGAGCGT 2801891 Query 43166 CTTTACAAAGATTTGCAT 43183 ||| || ||||| ||||| Sbjct 2801892 CTTGACGAAGATCTGCAT 2801909 Score = 107 bits (118), Expect = 2e-18 Identities = 141/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| ||||| ||||| || | ||||| || |||| || |||||||| || ||||| Sbjct 2802282 CTCCTTCTGAATGTTGTAGTCGGAAAGAGTACGGCCGTCCTCCAGCTGCTTCCCGGCGAA 2802341 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || ||||||||||||| ||| | || |||||| || ||| || || | ||| Sbjct 2802342 GATAAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTATCTTGGATCTTCGCCTTCA-CGT 2802400 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | |||||| || || || |||| |||||||| ||||| || | ||||| | Sbjct 2802401 TGTCGATGGTGTCGGAGGACTCGACTTCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTCA 2802460 Query 43171 CAAAGATTTGCAT 43183 | ||||| ||||| Sbjct 2802461 CGAAGATCTGCAT 2802473 >seq1 Length=4606855 Score = 111 bits (122), Expect = 2e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 |||||||| | || |||||| || |||||||| || | || || || |||| || Sbjct 1903741 ACCAAATGAAGCGTTGACTCCTTCTGGATATTGTAGTCGGAAAGGGTACGACCGTCCTCA 1903682 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 |||||||| || ||||| || || || |||||||| | ||| | || ||| |||||| || Sbjct 1903681 AGCTGCTTGCCGGCGAAGATCAGACGTTGCTGGTCAGGCGGGATGCCCTCTTTGTCC-TG 1903623 Query 43095 ATTTTTTGTTTGAGCGTCGCC-ACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153 | | || | | | | | | | |||||| ||| || || || | ||||| || || Sbjct 1903622 AATCTTCGCCTTAACATTATCGATGGTGTCGGACGACTCGACCTCAAGAGTGATAGTCTT 1903563 Query 43154 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||||| || ||||| |||||||||||||| Sbjct 1903562 GCCCGTGAGGGTCTTGACAAAGATTTGCAT 1903533 Score = 111 bits (122), Expect = 2e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 42987 GTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCA 43046 ||||||||||| || || ||||| |||| || || || |||| || | |||||| || Sbjct 1904463 GTGCTCTCCTTCTGGATGTTGTAGTCAGAGAGCGTGCGGCCGTCCTCCAACTGCTTCCCC 1904404 Query 43047 GCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTG 43106 ||||| ||||| ||||||||||| | ||| | | |||||||||| ||| | || | | Sbjct 1904403 GCGAAGATGAGGCGCTGCTGGTCAGGCGGAATACCCTCCTTGTCC-TGAATCTTCGCCTT 1904345 Query 43107 AGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGT 43165 ||| | | | |||||| || || || || | |||||| || |||||||| || || Sbjct 1904344 CACGTTGTCGATCGTGTCCGAGGACTCGACCTCCAGCGTGATCGTCTTGCCCGTGAGGGT 1904285 Query 43166 CTTTACAAAGATTTGCAT 43183 ||| || || || ||||| Sbjct 1904284 CTTGACGAAAATCTGCAT 1904267 Score = 89.7 bits (98), Expect = 6e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 42987 GTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCA 43046 ||||||||||| || || || ||||| | || || || | || || |||||||| ||| Sbjct 1903957 GTGCTCTCCTTCTGGATGTTATAATCGGACAACGTGCGACCATCCTCAAGCTGCTTCCCA 1903898 Query 43047 GCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTG 43106 || || ||||| |||||||| || | || | | ||||||| | || | |||| | Sbjct 1903897 GCAAAAATGAGGCGCTGCTGATCAGGAGGGATCCCTTCCTTGT-CTTGGATCTTTGCCTT 1903839 Query 43107 AGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGT 43165 | ||| | | | |||||| || || || |||| ||||| || || || || | ||| Sbjct 1903838 AACGTTGTCGATCGTGTCCGAAGACTCGACCTCGAGAGTGATAGTCTTTCCTGTCAACGT 1903779 Query 43166 CTTTACAAAGATTTGCAT 43183 ||| || || |||||||| Sbjct 1903778 CTTCACGAAAATTTGCAT 1903761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571816484955680