Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ganoderma_20sp._2010597_20SS1_20[JGI_20Gansp1_202011-03-16] 156 sequences; 39,522,573 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq4 208 7e-49 seq2 183 3e-41 seq3 109 5e-19 seq1 107 2e-18 >seq4 Length=2972551 Score = 208 bits (230), Expect = 7e-49 Identities = 511/769 (66%), Gaps = 7/769 (1%) Strand=Plus/Plus Query 22109 TCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCCCGTC 22168 || || || |||| || || | ||||||||| ||||| ||||| |||||||||||| Sbjct 1422309 TCGACCGTGAACTTGATCGCCTGTGCGGCCGGGCGTGTGCGGAGATAGTACATGCCCGTC 1422368 Query 22169 TTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGGCAAG 22228 ||||||||| ||||||| ||||||| || || |||||| | || | ||||| Sbjct 1422369 TTCAGACCCTTCTTCCAGCCGTAAAAGTGCATGCTCGTCAACTGCCCGTTCGTCGGCGCT 1422428 Query 22229 TCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGCCATA 22288 | || || || |||| |||||| ||| ||| || || || || || ||||| | Sbjct 1422429 TGCAGGTGGACGTTGAGCGACTGCGACTGGCAGATGAATGCGCCACGGTCCGCGGCGAGG 1422488 Query 22289 TTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCC-TGATCTCTAA 22347 | | | | | || || ||||| ||||||||||| | | ||| ||| || Sbjct 1422489 TCAAGAACCTTCTTCTGTGAAATCTCCCAGACGGTCTTGTAGA-TCGCCTTGACGTCGTC 1422547 Query 22348 CGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTTTAATCGT 22407 || || ||||| |||||| ||||||||| ||| || |||| ||| || || Sbjct 1422548 GGGGATAATGTCGATGTTCTGGATGGACCCGTTGTTGGCGATAATCATATTCTTCATGTC 1422607 Query 22408 ATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTTGAAA 22467 ||||||||||| |||| || | || || || || ||| || || || Sbjct 1422608 ATCGTTCCACAGGCCGAGCTCGACGAGCTCGCGGAGGAGCCACGGGCACACGACCTGGAA 1422667 Query 22468 CTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATTCATT 22527 |||||| | | ||||| || || |||||| ||| | || ||||| | || || Sbjct 1422668 CTCGCCAGCGAGCACGCGACGGGTATAGATGTTGCTGGTGTATGGCTCGAAGCACTCGTT 1422727 Query 22528 GTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCT 22587 ||| ||||| ||||| | || || ||||| ||||| ||||| | || |||||||| || Sbjct 1422728 GTTGCCCAGAATCTGCGATGTGGAGGCGGTAGGCATGGGCGCGACGAGGAGCGAGTTCCT 1422787 Query 22588 CAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGATCGGACGGCGT 22647 | |||||||| | | || |||||| | | ||||||||| ||||| | || || Sbjct 1422788 AAGGCCGTGCTGAGCGACCTTGGCCTTGAGACTGGCCCAGTCCCAAAGATCCGTAGGAGT 1422847 Query 22648 CACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCTGCCTTCGTACGT 22707 || | |||| | |||||||| | | ||| | ||| || || || ||||| || Sbjct 1422848 GAC---GCCCCATAGGTCGTATTGGAGCTGGCCCTGGGACGCGGGACTACCCTCGTATGT 1422904 Query 22708 TTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCAACGCGCCGTAATATAT 22767 ||||| ||||||| || || | || || || ||||| | ||| ||| || || Sbjct 1422905 CTCGTAGGGACCATCAGTCTGTGCCATCTCACAACTTGCCTCGACGGCGGCGTGGTAGAT 1422964 Query 22768 AGTCTCGAAGATTTTCTTGTTCA-ATTCGGCGGCGGCGACGCTTTCGTACGGCATACGCA 22826 |||||| |||| | | || | || || || ||| || |||||||||| | Sbjct 1422965 TGTCTCGGAGATCTGCAGATTGAGCTTTCGC-GCCTCGATAGAGTCAAACGGCATACGGA 1423023 Query 22827 TCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCG 22875 | || ||| ||||| || | |||||| || || || ||||| || || Sbjct 1423024 GCGCCATGAAGGCGTCTGCGAGACCCTGCACACCAATGCCGATGGGACG 1423072 >seq2 Length=3722621 Score = 183 bits (202), Expect = 3e-41 Identities = 379/561 (68%), Gaps = 5/561 (1%) Strand=Plus/Plus Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 || ||| | |||||||| ||| |||| || || ||||| |||||||| | ||||| Sbjct 2462673 ATATGGCAAATGTACAAGCGAGCACAAGCGTCCTTCTGGACGGTCGAAGAGATCGACCTC 2462732 Query 57630 TCTAAGGATCTGAGCGATTGGGATTCC---CTCAAAGAATCTGAGAGAAATTTTATTAAA 57686 || | ||| | ||| ||| || |||| ||| ||| | | || | Sbjct 2462733 TCGCATGATATTCCCGACTGGAATGGGAAGCTCACAGATAGCGAGCGTCACTTCCTCTCC 2462792 Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 |||| |||| ||||| || || || || ||||| || |||||||| | ||||| | Sbjct 2462793 TACGTCCTGGCCTTTTTTGCGGCCTCGGACGGTATCGTCAACGAGAACCTCGTCGAGCGG 2462852 Query 57747 TTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATT 57806 ||||| | || || || | | |||||| ||||||| || || || || | || Sbjct 2462853 TTTTCTAACGAGGTTCAGGCCGCCGAGGCGCGATGCTTCTATGGCTTCCAGATCATGATC 2462912 Query 57807 GAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGAC 57866 |||||||| || || || | || || || ||||| || || ||| | | |||| ||| Sbjct 2462913 GAAAACGTCCACTCCGAGACCTACTCCCTTCTCATTGACACTTACATCAGGGACCCAGAC 2462972 Query 57867 GAGAA-ACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGA 57925 |||| |||| || ||| |||| ||||| || || ||| ||| |||||||| || Sbjct 2462973 GAGAGGACGTTC-CTCTTCGACGCCATCGAGACTATACCCTGCATCAAGAAGAAGGCCGA 2463031 Query 57926 GTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTT 57985 ||| || | |||||| | | | || |||||| ||| |||| |||| || Sbjct 2463032 TTGGGCATTACGCTGGATAGCTGATGACCAGTCCGTGTTCGCTGAGCGGCTGGTCGCCTT 2463091 Query 57986 CGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAA 58045 |||||| || || || |||||||| || || | ||||| |||| || ||| | ||||| Sbjct 2463092 CGCCGCTGTAGAGGGCATATTCTTCTCCGGGTGTTTTGCCTCAATCTTCTGGCTCAAGAA 2463151 Query 58046 ACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCT 58105 || || |||||||||||| ||||||| |||||| | || ||||| || ||||| | Sbjct 2463152 GCGTGGGCTGATGCCCGGCTTGACGTTCTCGAACGAGCTCATCTCGCGTGATGAGGGCAT 2463211 Query 58106 CCATACTGATTTTGCGTGCCT 58126 || || || || || || || Sbjct 2463212 GCACACCGACTTCGCTTGTCT 2463232 Score = 156 bits (172), Expect = 4e-33 Identities = 376/564 (67%), Gaps = 15/564 (3%) Strand=Plus/Minus Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 || ||| | |||||||| |||||||| || || || ||||| | || || | || || Sbjct 2461297 ATCTGGCAAATGTACAAGAAGGCAGAGGCTTCTTTCTGGACTGCTGAGGAGATGGATCTT 2461238 Query 57630 TCTAAGGATCTGAGCGATTGGGATTCC---CTCAAAGAATCTGAGAGAAATTTTATTAAA 57686 || |||||||| || ||| | | ||||| | |||| | |||| | Sbjct 2461237 TCCAAGGATCTCCATGACTGGAACAACAGGCTCAACAACGATGAGCGCCATTTCGTCTCC 2461178 Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 || || | || || |||||||| || || || || || |||||||| | ||||| | Sbjct 2461177 CATGTCCTTGCCTTCTTCGCCGCCTCGGACGGCATCGTCAACGAGAACCTTGTCGAGCGT 2461118 Query 57747 TTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATT 57806 || || | || || || | | ||||| | || || ||||| || ||| | || Sbjct 2461117 TTCTCCAACGAGGTCCAGGCCGCCGAGGCCCGCTGTTTCTACGGCTTCCAAATCATGATG 2461058 Query 57807 GAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAAC--G 57864 || ||| | ||||| || | || || || ||||||||||| ||| | |||||| | | Sbjct 2461057 GAGAACATCCATTCCGAGACCTACTCCCTCCTCATCGATACCTACATCAAGGACCCCAGG 2460998 Query 57865 ACGAGAAACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAG 57924 | | | ||| || || |||| ||||| || || || ||| |||||||| | Sbjct 2460997 CAGCGTGA-GTAC-CTCTTTGACGCCATCGAGACGATCCCTTGCATCAAGAAGAAGGCCG 2460940 Query 57925 AGTGGTCAATCAAATGGATA----AAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATC 57980 | ||| | || ||||| | ||| | || | ||||| || | || || Sbjct 2460939 ACTGGGCCCTCCGCTGGATCTCTGACAAG----AATTCCGCTTTCGCGGAACGCCTTGTC 2460884 Query 57981 GCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATG 58040 || ||||| || ||||| ||||| ||||| || || ||| ||| | || || ||| | Sbjct 2460883 GCCTTCGCTGCTGTCGAGGGTATCTTCTTCTCTGGTTCCTTCGCGTCTATCTTCTGGCTC 2460824 Query 58041 AAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAG 58100 ||||| |||||| |||||||||| || || || |||||| | || |||||||||||| Sbjct 2460823 AAGAAGCGCGGCTTGATGCCCGGTCTCACTTTCTCGAACGAGCTCATCTCGCGCGACGAG 2460764 Query 58101 GGTCTCCATACTGATTTTGCGTGC 58124 ||| | || || || ||||||||| Sbjct 2460763 GGTATGCACACCGACTTTGCGTGC 2460740 >seq3 Length=3223173 Score = 109 bits (120), Expect = 5e-19 Identities = 152/212 (72%), Gaps = 1/212 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||||||||| ||||| ||||| |||||||| |||| || || | ||| Sbjct 2802192 ATGCAAATCTTCGTAAAGACGCTGACGGGCAAGACGATCACTCTCGAGGTGGAGTCTTCC 2802133 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| || || ||| ||||| ||| | || || |||||| Sbjct 2802132 GACACCATCGACAATGTCAAGGCGAAGATCCAGGATAAGGAGGGCATCCCTCCTGACCAG 2802073 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| | || || || ||||| |||||||| ||| | || || || || ||| Sbjct 2802072 CAGCGCTTGATCTTTGCGGGCAAGCAGTTGGAGGACGGTCGCACCCTGTCTGACTACAAC 2802013 Query 31373 ATTCAAAAAGAATCGACTCTTCATCT-GGTAC 31403 ||||| || || || ||||| || ||||| Sbjct 2802012 ATTCAGAAGGAGAGCACCCTTCACCTCGGTAC 2801981 Score = 105 bits (116), Expect = 6e-18 Identities = 152/213 (71%), Gaps = 1/213 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| |||| ||||| || |||||| |||| || || | || Sbjct 2802474 CATGCAGATCTTCGTGAAGACCTTGACCGGCAAGACCATCACCCTCGAAGTCGAGTCCTC 2802415 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| |||| | || || || || || ||||| ||| | ||||||||||| Sbjct 2802414 CGACACCATCGACAACGTGAAGGCGAAGATCCAAGATAAGGAGGGCATCCCGCCCGACCA 2802355 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||||| || ||||| || || ||| |||| ||| ||| | ||| || || Sbjct 2802354 GCAGCGTCTTATCTTCGCCGGGAAGCAGCTGGAGGACGGCCGTACTCTTTCCGACTACAA 2802295 Query 31372 CATTCAAAAAGAATCGACTCTTCATCT-GGTAC 31403 |||||| || || || || || || || ||||| Sbjct 2802294 CATTCAGAAGGAGTCCACGCTCCACCTCGGTAC 2802262 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| || || || || || |||||| | || ||||| |||| Sbjct 2801909 ATGCAGATCTTCGTCAAGACGCTCACGGGGAAGACCATCACCTTGGAGGTTGAGTCGTCG 2801850 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || || || || ||||||||| || | ||||| |||||| Sbjct 2801849 GACACGATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGTATTCCGCCAGACCAG 2801790 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||||||| || ||||| ||||| ||| | || || Sbjct 2801789 CAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGA 2801755 >seq1 Length=4606855 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| ||||| || || ||||| |||||||| | || || || | || Sbjct 1904039 ATGCAGATTTTCGTGAAGACGCTTACTGGCAAGACGATCACGCTGGAGGTCGAGTCTTCT 1904098 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||| | || || || || ||||||||| ||| | || || |||||| Sbjct 1904099 GATACCATCGACAACGTGAAGGCGAAGATTCAGGACAAGGAGGGCATCCCACCTGACCAG 1904158 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||||| || ||||||||||| ||| | || || | ||| | ||||| ||| Sbjct 1904159 CAACGTCTGATCTTCGCTGGCAAGCAGCTCGAGGATGGTCGTACTCTCTCGGATTACAAC 1904218 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || ||||| || ||||| ||||| || || | | ||| |||| |||| Sbjct 1904219 ATCCAAAAGGAGTCGACACTTCACCTTGTCTTGCGTCTGCGGGGAGGTA 1904267 Score = 93.3 bits (102), Expect = 4e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| ||||| || || ||||| |||||||| | || || || | || Sbjct 1904267 ATGCAGATTTTCGTCAAGACCCTCACGGGCAAGACGATCACGCTGGAGGTCGAGTCCTCG 1904326 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || || || || ||||||||| || | ||||| |||||| Sbjct 1904327 GACACGATCGACAACGTGAAGGCGAAGATTCAGGACAAGGAGGGTATTCCGCCTGACCAG 1904386 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 ||||| || || ||||| || || |||||||| ||| Sbjct 1904387 CAGCGCCTCATCTTCGCGGGGAAGCAGTTGGAGGAC 1904422 Score = 87.8 bits (96), Expect = 2e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| ||||| ||||||| || || ||||| |||| || || | || Sbjct 1903761 ATGCAAATTTTCGTGAAGACGTTGACAGGAAAGACTATCACTCTCGAGGTCGAGTCTTCG 1903820 Query 31253 GACAGTGTCGA-AACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| |||| | | || || || ||||||||||| | || || || || Sbjct 1903821 GACACGATCGACAACGTTAAGGCAAAG-ATCCAAGACAAGGAAGGGATCCCTCCTGATCA 1903879 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| || || || ||||| || ||| | || || | || || ||||||||| Sbjct 1903880 GCAGCGCCTCATTTTTGCTGGGAAGCAGCTTGAGGATGGTCGCACGTTGTCCGATTATAA 1903939 Query 31372 CATTCAAAAAGA 31383 ||| || || || Sbjct 1903940 CATCCAGAAGGA 1903951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445765530755520