Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ganoderma_20sp._2010597_20SS1_20[JGI_20Gansp1_202011-03-16] 156 sequences; 39,522,573 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq2 147 3e-30 >seq2 Length=3722621 Score = 147 bits (162), Expect = 3e-30 Identities = 372/562 (66%), Gaps = 8/562 (1%) Strand=Plus/Plus Query 33578 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGT 33637 ||| || || || ||| ||||| ||||||||| | || | ||||| || || || Sbjct 2460737 CAAGCACGCAAAGTCGGTGTGCATACCCTCGTCGCGCGAGATGAGCTCGTTCGAGAAAGT 2460796 Query 33638 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAA 33697 ||| |||||||| | ||| ||||| || ||||| || || || ||||| || || || || Sbjct 2460797 GAGACCGGGCATCAAGCCGCGCTTCTTGAGCCAGAAGATAGACGCGAAGGAACCAGAGAA 2460856 Query 33698 GAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCT---GTC 33754 |||||| || || || ||||| ||||| | ||| | || | || ||| | ||| Sbjct 2460857 GAAGATACCCTCGACAGCAGCGAAGGCGACAAGGCGTTCCGCGAAAGCGGAATTCTTGTC 2460916 Query 33755 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 33814 | ||||| | ||||| ||||||||||| || | ||||| ||||| || ||||| Sbjct 2460917 AGAGATCCAGCGGAGGGCCCAGTCGGCCTTCTTCTTGATGCAAGGGATCGTCTCGATGGC 2460976 Query 33815 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATA 33874 | |||||| || | | | || || | || |||||||| | || || Sbjct 2460977 GTCAAAGAGGTACTCACGCTGCCTGGGGTCCTTGATGTAGGTATCGATGAGGAGGGAGTA 2461036 Query 33875 CATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGT 33934 | || ||||| ||||| || || || || || ||||||||||| | ||||||| Sbjct 2461037 GGTCTCGGAATGGATGTTCTCCATCATGATTTGGAAGCCGTAGAAACAGCGGGCCTCGGC 2461096 Query 33935 AATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGC 33994 ||| || || | | || || || | | || || || || || || || ||| Sbjct 2461097 GGCCTGGACCTCGTTGGAGAAACGCTCGACAAGGTTCTCGTTGACGATGCCGTCCGAGGC 2461156 Query 33995 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AG---TTTAT 34050 || || || || | ||||| | |||| || || | |||| || || | Sbjct 2461157 GGCGAAGAAGGCAAGGACATGGGAGACGAAATGGCGCTCATC-GTTGTTGAGCCTGTTGT 2461215 Query 34051 TCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTG 34110 |||| |||| || ||| || || | ||||| || || | ||||| || || ||||||| Sbjct 2461216 TCCAGTCATGGAGATCCTTGGAAAGATCCATCTCCTCAGCAGTCCAGAAAGAAGCCTCTG 2461275 Query 34111 CCTTTTTATACATATTCCAGAT 34132 |||| || ||||| | |||||| Sbjct 2461276 CCTTCTTGTACATTTGCCAGAT 2461297 Score = 109 bits (120), Expect = 7e-19 Identities = 288/439 (66%), Gaps = 3/439 (1%) Strand=Plus/Minus Query 33573 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAA 33632 |||| | ||| ||||| ||| ||||| ||||| || | || | ||||| || Sbjct 2463238 AACAGGAGACAAGCGAAGTCGGTGTGCATGCCCTCATCACGCGAGATGAGCTCGTTCGAG 2463179 Query 33633 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCG 33692 ||||| | |||||||| || |||||||| || ||||| || || || || || | ||| Sbjct 2463178 AACGTCAAGCCGGGCATCAGCCCACGCTTCTTGAGCCAGAAGATTGAGGCAAAACACCCG 2463119 Query 33693 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTG 33752 || ||||| || || ||||| || || ||||| | || | ||| | | ||| | Sbjct 2463118 GAGAAGAATATGCCCTCTACAGCGGCGAAGGCGACCAGCCGCTCAGCGAACACGGACTGG 2463059 Query 33753 TCATG---TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 33809 |||| |||||| | ||||||||||||||||| || | || || || || || Sbjct 2463058 TCATCAGCTATCCAGCGTAATGCCCAATCGGCCTTCTTCTTGATGCAGGGTATAGTCTCG 2462999 Query 33810 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGA 33869 ||||| | ||||| | | | || | || | | ||||| || || | ||| Sbjct 2462998 ATGGCGTCGAAGAGGAACGTCCTCTCGTCTGGGTCCCTGATGTAAGTGTCAATGAGAAGG 2462939 Query 33870 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCC 33929 || | || || || | |||||| || ||||| || || ||||| |||| ||| Sbjct 2462938 GAGTAGGTCTCGGAGTGGACGTTTTCGATCATGATCTGGAAGCCATAGAAGCATCGCGCC 2462879 Query 33930 TCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCA 33989 |||| ||| || || || |||| || || | | || || || || || || || Sbjct 2462878 TCGGCGGCCTGAACCTCGTTAGAAAACCGCTCGACGAGGTTCTCGTTGACGATACCGTCC 2462819 Query 33990 CTGGCTGCAAAAAACGCCA 34008 ||| |||||||| |||| Sbjct 2462818 GAGGCCGCAAAAAAGGCCA 2462800 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629816371855680