Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ganoderma_20sp._2010597_20SS1_20[JGI_20Gansp1_202011-03-16] 156 sequences; 39,522,573 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq1 96.9 3e-15 seq2 91.5 1e-13 seq3 89.7 5e-13 >seq1 Length=4606855 Score = 96.9 bits (106), Expect = 3e-15 Identities = 137/193 (71%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 139573 CTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATA 139632 ||| || || |||||||||||| || |||| || || ||||| || |||||| | Sbjct 1903952 CTCCTTCTGGATGTTATAATCGGACAACGTGCGACCATCCTCAAGCTGCTTCCCAGCAAA 1903893 Query 139633 GATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTG 139692 || || || |||||||| ||||| || ||||| ||||| ||| ||| || | | Sbjct 1903892 AATGAGGCGCTGCTGATCAGGAGGGATCCCTTCCTTGTCTTGGATCTTTGCCTTAACGTT 1903833 Query 139693 TTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTAC 139752 || | ||||| | | ||| ||||| | || | ||||| || |||||||| || || Sbjct 1903832 GTCGATCGTGTCCGAAGACTCGACCTCGAGAGTGATAGTCTTTCCTGTCAACGTCTTCAC 1903773 Query 139753 GAATATTTGCATA 139765 ||| ||||||||| Sbjct 1903772 GAAAATTTGCATA 1903760 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | |||||| || | ||||| || ||||| ||||| ||||| ||||| Sbjct 1904265 CCTCCCCGCAGACGCAAGACAAGGTGAAGTGTCGACTCCTTTTGGATGTTGTAATCCGAG 1904206 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | || |||||||| || ||||| |||||||||||||||| || || || Sbjct 1904205 AGAGTACGACCATCCTCGAGCTGCTTGCCAGCGAAGATCAGACGTTGCTGGTCAGGTGGG 1904146 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 ||||| || ||||| ||| | || | || | | || | || || | | ||| || Sbjct 1904145 ATGCCCTCCTTGTC-CTGAATCTTCGCCTTCACGTTGTCGATGGTATCAGAAGACTCGAC 1904087 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | || | ||||||||| || | ||| || ||||| || ||||| Sbjct 1904086 CTCCAGCGTGATCGTCTTGCCAGTAAGCGTCTTCACGAAAATCTGCAT 1904039 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || || |||| ||| ||||| || || || || || ||| Sbjct 1903759 CCACCGCGGAGACGAAGGACCAAATGAAGCGTTGACTCCTTCTGGATATTGTAGTCGGAA 1903700 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||| || ||||| || || || |||||||||||||||| || || || Sbjct 1903699 AGGGTACGACCGTCCTCAAGCTGCTTGCCGGCGAAGATCAGACGTTGCTGGTCAGGCGGG 1903640 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCAC 139716 ||||| |||||||| ||| | || | ||| | | || | ||||||| | ||| || Sbjct 1903639 ATGCCCTCTTTGTC-CTGAATCTTCGCCTTAACATTATCGATGGTGTCGGACGACTCGAC 1903581 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||||| || | |||||||| || | || || || || ||||||||| Sbjct 1903580 CTCAAGAGTGATAGTCTTGCCCGTGAGGGTCTTGACAAAGATTTGCATA 1903532 >seq2 Length=3722621 Score = 91.5 bits (100), Expect = 1e-13 Identities = 118/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 52898 TGAACGCGACCATGATGTGCGAGTACATCGAGTTTGTTGCGGACAGACTGTTGATGCAGC 52957 |||||||| || |||||||| | ||||||||||| || || ||||||||| | | | Sbjct 2463406 TGAACGCGGCCTTGATGTGCCAATACATCGAGTTCGTCGCAGACAGACTGCTCGTAGCTC 2463465 Query 52958 TCGGTCAGCCGAAATACTATAATGCGCGTAACCCCTTTTCGTTTATGAACAACATATCGC 53017 |||| | |||| |||| || | |||||| || || ||| | | || || | Sbjct 2463466 TCGGAAACGAGAAACACTACCATTCAACTAACCCGTTCGACTTCATGGATATGATCTCAC 2463525 Query 53018 TCGAGGGCAAAACAAACTTTTTCGAGAGACGTGTGGGCGAGTA 53060 || ||||||| || ||||||||||||| |||||| |||||| Sbjct 2463526 TCCAGGGCAAGACCAACTTTTTCGAGAAACGTGTCTCCGAGTA 2463568 Score = 82.4 bits (90), Expect = 8e-11 Identities = 120/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 52607 CCACTTTTGCCGAACGTCTGGTCGCGTTTGCTATAGTGGAAGGTGTGtttttttCGGGTA 52666 || |||| || ||||| || ||||| || ||| || || ||| | || || || ||| Sbjct 2460906 CCGCTTTCGCGGAACGCCTTGTCGCCTTCGCTGCTGTCGAGGGTATCTTCTTCTCTGGTT 2460847 Query 52667 GTTTTGCGGCAATATTTTACATCAAAACCTTGGGCATAATGCCCGGCCTCACGTTTAGCA 52726 || ||| | || || | |||| | ||| | |||||||| ||||| || | Sbjct 2460846 CCTTCGCGTCTATCTTCTGGCTCAAGAAGCGCGGCTTGATGCCCGGTCTCACTTTCTCGA 2460787 Query 52727 ACGAGTTGATATCGCGCGACGAAGGAATGCACACAGATTTTGCGTGTTTG 52776 ||||| | || ||||||||||| || |||||||| || |||||||| ||| Sbjct 2460786 ACGAGCTCATCTCGCGCGACGAGGGTATGCACACCGACTTTGCGTGCTTG 2460737 >seq3 Length=3223173 Score = 89.7 bits (98), Expect = 5e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 139561 GTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTG 139620 ||| | ||| ||||| || |||||||| || ||| | || | ||| || ||||| Sbjct 2802270 GTGGAGCGTGGACTCCTTCTGAATGTTGTAGTCGGAAAGAGTACGGCCGTCCTCCAGCTG 2802329 Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680 || || || |||| ||||| ||||| ||||| || ||||| || || || ||| || Sbjct 2802330 CTTCCCGGCGAAGATAAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTATCTTGGATCTT 2802389 Query 139681 TTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 || | | || | ||||||| || ||| || || | ||| | ||||||||||| Sbjct 2802390 CGCCTTCACGTTGTCGATGGTGTCGGAGGACTCGACTTCGAGGGTGATGGTCTTGCCGGT 2802449 Query 139741 CAACGTTTTTACGAATATTTGCAT 139764 ||| || || ||||| || ||||| Sbjct 2802450 CAAGGTCTTCACGAAGATCTGCAT 2802473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496063032675200