Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ganoderma_20sp._2010597_20SS1_20[JGI_20Gansp1_202011-03-16] 156 sequences; 39,522,573 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq23 93.3 2e-14 seq9 86.0 3e-12 seq2 86.0 3e-12 seq10 84.2 1e-11 seq6 84.2 1e-11 seq16 82.4 4e-11 >seq23 Length=11628 Score = 93.3 bits (102), Expect = 2e-14 Identities = 77/94 (82%), Gaps = 2/94 (2%) Strand=Plus/Plus Query 11444 AAAAAATCAAATT--GGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 ||||||||| || |||| | | |||||||||| ||||||| ||||||||||||| Sbjct 2263 AAAAAATCATGTTCTGGCCAACGCCGGGATCGAACCGACGACCTTGGCGTTATTAGCACC 2322 Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCCGTCGAC 11535 ||||||| ||||||||||||| | |||||| ||| Sbjct 2323 ACGCTCTAACCAACTGAGCTAGTCGGCCGTTGAC 2356 >seq9 Length=2326135 Score = 86.0 bits (94), Expect = 3e-12 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| ||||||||||||| | || Sbjct 650913 GGATCGAACCGACGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAGTCGG 650854 Query 11528 CCGT 11531 |||| Sbjct 650853 CCGT 650850 Score = 84.2 bits (92), Expect = 1e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||| | | |||||||||| ||||||| ||||||||||||| ||||||| ||||| Sbjct 637643 TTGGCCAACGCCGGGATCGAACCGACGACCTTGGCGTTATTAGCACCACGCTCTAACCAA 637702 Query 11515 CTGAGCTAATGGGCC 11529 |||||||| | |||| Sbjct 637703 CTGAGCTAGTCGGCC 637717 >seq2 Length=3722621 Score = 86.0 bits (94), Expect = 3e-12 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| ||||||||||||| | || Sbjct 1027415 GGATCGAACCGACGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAGTCGG 1027474 Query 11528 CCGT 11531 |||| Sbjct 1027475 CCGT 1027478 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| ||||||||||||| | || Sbjct 1015865 GGATCGAACCGACGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAGTCGG 1015924 Query 11528 CC 11529 || Sbjct 1015925 CC 1015926 >seq10 Length=2285585 Score = 84.2 bits (92), Expect = 1e-11 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||| | | |||||||||| ||||||| ||||||||||||| ||||||| || Sbjct 1322299 AAAGTGGCCAACGCCGGGATCGAACCGACGACCTTGGCGTTATTAGCACCACGCTCTAAC 1322240 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||| | |||| Sbjct 1322239 CAACTGAGCTAGTCGGCC 1322222 >seq6 Length=2725691 Score = 84.2 bits (92), Expect = 1e-11 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||| | | |||||||||| ||||||| ||||||||||||| ||||||| || Sbjct 29506 AAAATGGCCAACGCCGGGATCGAACCGACGACCTTGGCGTTATTAGCACCACGCTCTAAC 29565 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||| | |||| Sbjct 29566 CAACTGAGCTAGTCGGCC 29583 >seq16 Length=533757 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| ||||||||||||| | || Sbjct 147614 GGATCGAACCGACGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAGTCGG 147673 Query 11528 CC 11529 || Sbjct 147674 CC 147675 Lambda K H 0.639 0.410 0.921 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261490702839856