Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ganoderma_20sp._2010597_20SS1_20[JGI_20Gansp1_202011-03-16] 156 sequences; 39,522,573 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq6 140 5e-29 seq1 102 1e-17 seq11 87.8 3e-13 >seq6 Length=2725691 Score = 140 bits (154), Expect = 5e-29 Identities = 125/154 (81%), Gaps = 2/154 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| |||| |||| ||||| || ||||| || || ||||||||||| |||| Sbjct 2293078 CGCAAAGCGTCACCGCAAGATC-CTTCGCGACAACATTCAGGGCATCACCAAGCCCGCTA 2293020 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||||||||| || || ||||| || ||||||||| |||| || | |||| || |||| Sbjct 2293019 TCCGTCGTCTTGCCCGCCGTGGCGGTGTCAAGCGTATCTCCGGCCTCATCTACGAGGAGA 2292960 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGT 16584 ||||| |||| | |||||||||||| ||| ||| Sbjct 2292959 CTCGTGGTGTTCTTAAGATCTTCCTCGAGAACGT 2292926 Score = 107 bits (118), Expect = 3e-19 Identities = 92/114 (81%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 16471 AGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 ||| ||||||||||| ||||| |||||||| ||||| ||||| || ||||||||| |||| Sbjct 2166658 AGGTATCACCAAGCCCGCTATTCGTCGTCTTGCTCGCCGTGGAGGCGTCAAGCGTATCTC 2166599 Query 16531 TGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGT 16584 || | |||| || |||| |||| |||| | |||||||||||| ||| ||| Sbjct 2166598 GGGTCTCATCTACGAGGAGACCCGTGGTGTTCTCAAGATCTTCCTCGAGAACGT 2166545 >seq1 Length=4606855 Score = 102 bits (112), Expect = 1e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 16487 GCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAA 16546 |||||||| ||||| || || |||||||| || ||||| | || || | |||| || Sbjct 3440504 GCTATCCGGCGTCTCGCCCGCCGTGGTGGTGTGAAGCGCATTTCCGGCCTCATCTACGAG 3440445 Query 16547 GAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTAT 16606 |||| ||||| ||| ||||||||||||||| ||| |||||||| |||| || | || Sbjct 3440444 GAGACTCGTGGTGTCTTGAAGATCTTCCTCGAGAACGTTATCCGTGATTCTGTGACGTAC 3440385 Query 16607 ACCGAGCACGCTAA 16620 || |||||||| || Sbjct 3440384 ACTGAGCACGCCAA 3440371 >seq11 Length=2197043 Score = 87.8 bits (96), Expect = 3e-13 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 16487 GCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAA 16546 || ||||||||||| |||||||||||||| || || ||| |||| || | | || || Sbjct 947351 GCCATCCGTCGTCTCGCTCGTCGTGGTGGTGTGAAACGTATCTCCGGTCTTATTTACGAG 947292 Query 16547 GAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGT 16584 |||| ||||| ||| |||||||||||||| ||| ||| Sbjct 947291 GAGACTCGTGGTGTCCTGAAGATCTTCCTCGAGAACGT 947254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79075057368108