Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ganoderma_20sp._2010597_20SS1_20[JGI_20Gansp1_202011-03-16] 156 sequences; 39,522,573 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq25 140 2e-28 seq21 140 2e-28 seq1 116 2e-21 >seq25 Length=6558 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 854 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 913 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 914 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 948 >seq21 Length=14874 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 1580 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 1521 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 1520 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 1486 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| | |||||| ||||||| |||||||||||||||||||||||||||||||||| | Sbjct 13027 CTCTCTTTCCAAAGTGCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 13086 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||| ||| Sbjct 13087 GCCAATATTTAGCTTTA 13103 >seq1 Length=4606855 Score = 116 bits (128), Expect = 2e-21 Identities = 183/262 (70%), Gaps = 0/262 (0%) Strand=Plus/Plus Query 6232 CCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCG 6291 |||| ||||||| ||||| || ||||| || ||||| || |||||| |||| || | Sbjct 627785 CCAAAATCGAGGGCAAGGGCAATGGTATCAAGACCGTGCTTCCGAACATGTCTGACGTGG 627844 Query 6292 CTAAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCG 6351 | |||||| | || || | || || || || || | || || ||||| || |||| Sbjct 627845 CCCGCGCGCTCAGCCGACCCCCTACGTATCCCACCAAGTTCTTTGGCTGCGAGCTCGGCG 627904 Query 6352 CTCAGACGCAGTTTGATCACAAAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTG 6411 | |||||| ||| || | || ||||| || | |||||| ||||| |||| | | Sbjct 627905 CGCAGACGTCGTTCGACGAGAAGAACGATCGGTACATCGTCAACGGCGCGCACGATGCGA 627964 Query 6412 CCAAGCTGCAGGACTTACTTGACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCG 6471 | ||||||| || | || |||||||| || |||||| ||||| || || ||| Sbjct 627965 CGAAGCTGCGCGAGCTTCTCGACGGCTTCATCGACAAGTTCGTGCTCTGCAAGGCGTGCA 628024 Query 6472 ATAACCCGGAGACCGAGCTTAT 6493 | ||||||||||| || || || Sbjct 628025 AGAACCCGGAGACGGACCTGAT 628046 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | ||| | ||||||||||| || |||||| || |||||||| || | Sbjct 1903761 TACCACCGCGGAGACGAAGGACCAAATGAAGCGTTGACTCCTTCTGGATATTGTAGTCGG 1903702 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | ||| |||| || | || || ||||| || || || ||||| || || | | Sbjct 1903701 AAAGGGTACGACCGTCCTCAAGCTGCTTGCCGGCGAAGATCAGACGTTGCTGGTCAGGCG 1903642 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATC--TCCACTTTC 38266 ||| ||| ||||||||| ||| || ||| ||||| | || || || | || || Sbjct 1903641 GGATGCCCTCTTTGTCCTGAATCTTCGCCTTAACATTATCGATGGTGTCGGACGAC--TC 1903584 Query 38267 AACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || | || ||||| || ||||| | ||| || || || || ||||| Sbjct 1903583 GACCTCAAGAGTGATAGTCTTGCCCGTGAGGGTCTTGACAAAGATTTGCAT 1903533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334946563181636