Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ganoderma_20sp._2010597_20SS1_20[JGI_20Gansp1_202011-03-16] 156 sequences; 39,522,573 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq2 219 5e-52 >seq2 Length=3722621 Score = 219 bits (242), Expect = 5e-52 Identities = 394/571 (69%), Gaps = 11/571 (2%) Strand=Plus/Plus Query 93089 AAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTT 93148 ||||||||||||||||| || | ||| ||||| || || || | ||| || ||| || Sbjct 2460738 AAGCACGCAAAGTCGGTGTGCATACCCTCGTCGCGCGAGATGAGCTCGTTCGAGAAAGTG 2460797 Query 93149 AAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaa 93208 | ||| || | || || || ||||||||||| || || || || || |||||| || Sbjct 2460798 AGACCGGGCATCAAGCCGCGCTTCTTGAGCCAGAAGATAGACGCGAAGGAACCAGAGAAG 2460857 Query 93209 aaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTG 93268 || ||||| || || || || || || |||| ||||| || ||| |||||||| || Sbjct 2460858 AAGATACCCTCGACAGCAGCGAAGGCGACAAGGCGTTCCGCGAAA---GCGGAATTCTTG 2460914 Query 93269 ---CTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATA 93325 |||||| | ||||| ||||| || ||||| || ||||| | || ||||| Sbjct 2460915 TCAGAGATCCAGCGGAGGGCCCAGTCGGCCTTCTTCTTGATGCAAGGGATCGTCTCGATG 2460974 Query 93326 GCGTTAAATAGGTAATCTCGCT-CGTCCGAATCTCGTATGTATGTATCGATTAACAGAGA 93384 |||| ||| ||||| || |||| | | | || | ||||| |||||||| | || || Sbjct 2460975 GCGTCAAAGAGGTACTCACGCTGCCTGGGGTCCTTG-ATGTAGGTATCGATGAGGAGGGA 2461033 Query 93385 ATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTC 93444 || | || ||||||| |||||||| |||||||| ||||||||||| | || || Sbjct 2461034 GTAGGTCTCGGAATGGATGTTCTCCATCATGATTTGGAAGCCGTAGAAACAGCGGGCCTC 2461093 Query 93445 CGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGA 93504 | | ||| || || | || || | ||| || || || || ||||| || || || || Sbjct 2461094 GGCGGCCTGGACCTCGTTGGAGAAACGCTCGACAAGGTTCTCGTTGACGATGCCGTCCGA 2461153 Query 93505 TGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGC---TT 93561 || || || || || | | ||| | ||||| |||||| | || ||| || Sbjct 2461154 GGCGGCGAAGAAGGCAAGGACATGGGAGACGAAATGGCGCTCATCGTTGTTGAGCCTGTT 2461213 Query 93562 ATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTC 93621 | ||| || ||||| || |||||||| | || || ||||||| || || || || Sbjct 2461214 GTTCCAGTCATGGAGATCCTTGGAAAGATCCATCTCCTCAGCAGTCCAGAAAGAAGCCTC 2461273 Query 93622 TGCTTTTTTGTACATATCCCATATGTCTTGA 93652 ||| || |||||||| | ||| || | |||| Sbjct 2461274 TGCCTTCTTGTACATTTGCCAGATCTGTTGA 2461304 Score = 183 bits (202), Expect = 3e-41 Identities = 379/561 (68%), Gaps = 11/561 (2%) Strand=Plus/Minus Query 93092 CACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAA 93151 || || |||||||| || | || || || || || || | ||| || ||| || || Sbjct 2463229 CAAGCGAAGTCGGTGTGCATGCCCTCATCACGCGAGATGAGCTCGTTCGAGAACGTCAAG 2463170 Query 93152 CCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaT 93211 || || | ||| || || ||||||||||| || ||||| ||||||| || || || ||| Sbjct 2463169 CCGGGCATCAGCCCACGCTTCTTGAGCCAGAAGATTGAGGCAAAACACCCGGAGAAGAAT 2463110 Query 93212 ATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTA----CT 93267 || || || || || || || || || | || || || || |||| | | Sbjct 2463109 ATGCCCTCTACAGCGGCGAAGGCGACCAGCCGCTCAGCGAACA---CGGACTGGTCATCA 2463053 Query 93268 GCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGC 93327 ||| ||||| ||| ||||||||||| || ||||| || || |||| || ||||| || Sbjct 2463052 GCT-ATCCAGCGTAATGCCCAATCGGCCTTCTTCTTGATGCAGGGTATAGTCTCGATGGC 2462994 Query 93328 GTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATA 93387 || || ||| | | |||||| | || | ||||| || || || | || || || Sbjct 2462993 GTCGAAGAGGAACGTCCTCTCGTCTGGGTCCCTGATGTAAGTGTCAATGAGAAGGGAGTA 2462934 Query 93388 CATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGT 93447 | || || ||||| || || || || ||||| || ||||| |||| || || | Sbjct 2462933 GGTCTCGGAGTGGACGTTTTCGATCATGATCTGGAAGCCATAGAAGCATCGCGCCTCGGC 2462874 Query 93448 GATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGC 93507 | ||| || || | |||||| | ||| ||||| || || ||||| ||||| || || || Sbjct 2462873 GGCCTGAACCTCGTTAGAAAACCGCTCGACGAGGTTCTCGTTGACGATACCGTCCGAGGC 2462814 Query 93508 TGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTT---ATC 93564 |||||||| |||| | | | || || ||| |||| | ||||| || Sbjct 2462813 CGCAAAAAAGGCCAGGACGTAGGAGAGGAAGTGACGCTCGCTATCTGTGAGCTTCCCATT 2462754 Query 93565 CCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGC 93624 ||| |||| | ||| | || || |||| |||||||| ||||| || || |||| ||| Sbjct 2462753 CCAGTCGGGAATATCATGCGAGAGGTCGATCTCTTCGACCGTCCAGAAGGACGCTTGTGC 2462694 Query 93625 TTTTTTGTACATATCCCATAT 93645 | |||||||| | |||||| Sbjct 2462693 TCGCTTGTACATTTGCCATAT 2462673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556859714121440